Category

SW 1 Cellular processes
bifL bifM bifN yfiS
yfiU sxzY sxzZ sxzA
yfhI csbB yfhO ygaD
ssuB ssuA ssuC yhcA
yhcE yhcG yhcH yhcI
yhcJ tcyP glpF pgcA
lytF lytE bcaP yhdP
cueR crcBA crcBB dat
nhaC bmrC bmrD khtU
khtT khtS yhaQ yhaP
trpP ecsA ecsB hmoB
pbpF gltT yhfQ bioY
yhjB glcP yhjP yhjQ
mblK wprA yisQ disA
yitG fabF appD appF
appAn appAc appB appC
oppA oppB oppC oppD
oppF yjbB cwlQ kefQ
manP pdaC yjkA yjkB
exuM exuT yjnA yjoB
xlyB pghB xepA xlyA
pitB steT dppB dppC
dppD dppE aeeB eepC
ykfD gdnC gdnD thiX
thiW thiV thiU mgtE
ktrD ykvT pfeT ptsG
ptsH ptsI pbpH dapX
ltdD dapH dapI yknU
yknV skiY skiZ fruA
ykpA mreBH ktrC ftsW
coaD spoVV ftsL pbpB
spoVD murE mraY murD
spoVE murG murB divIB
ftsA ftsZ ylmD sepF
divIVA pyrP cysP tcaB
rsgA plsX ecfA ecfAB
ecfT uppS rasP asd
dapG dapA bcbE rodZ
pbpX dacA cwlD pghC
ebrB ebrA cwlC xynP
pghL dinK alsT yngB
dacC yoeA iseA ggt
yoaB ybaR ybaS eesA
feuC feuB czrA feuA
walL btr nagZ cwlS
mdtK amiE yodF murP
ldcB yodL murR murQ
pghZ glmM glmS cwlP
blyA sunT dinF ugtP
queP ybcL dynA S834
pbuX kdgT gpsB ypqE
ponA tseB skfE dapB
skfF ypbE fmnP dacB
ybxG dacF fur spoIIM
mleN mciZ ybeC artR
artQ artP bmr glpT
yqiI mntR yqxL yqgT
ltaSC ybfG pstBB pstBA
pstA pstC pstS pbpA
zur unpK floA yqeW
spoIIP cwlH arsB cwlA
gltP gamP gamA gamR
yrkJ blt ybgF yrdP
czcD brnQ azlD azlC
glnT murI zinT yraO
levG levF levE levD
aapA yrhG gudP yrrS
pbpI yrrL glnQ glnH
glnM glnP yrvJ spoVB
alaP ycbK minD minC
mreD mreC mreB maf
ycbN ysoA rcmE cwlJ
zapA cstA araQ araP
araN pftB pftA lytT
lytS lmrB ytnM tcyN
tcyM tcyL tcyK tcyJ
braB ezrA refZ murC
sftA ytpQ natR natA
pbuO ythQ ythP murJ
opuD natB rmgP ytcQ
ytcP yccK msmE msmF
msmG bceB bceA ytrF
ytrE ytrD ytrC ytrB
ytoA ytnA ytlA ytlC
ytlD ytkC dps mntD
mntC cwlK mntB mntA
znuA znuC thiT floT
nfeDB znuB ktrA ktrB
lytG yubA kbfO pbpD
nupO nupP nupQ maeN
mrpA mrpB mrpC mrpD
mrpE mrpF mrpG niaP
yueF yceJ dhbF dhbB
dhbE dhbC dhbA besA
bioYB opuAA dapF opuAB
opuAC lytH fisB yunE
pucJ pucK frlP frlM
frlN frlO sufC metQ
metP metN lctP mdtP
mdr feuV mrgA yvrA
yvrB yvrC ycgH yvrN
yvrO fhuC fhuG fhuB
fhuD ltaSP yvgK modA
modB nhaK cadA copA
copZ csoR yvaD yvaE
opuBC opuBB opuBA opuCD
opuCC opuCB opuCA araE
yvbW yvfS yvfR ganP
ganS lutP epsK putP
pbpE aspP psmA psmB
mdxG mdxF mdxE psdB
psdA whiA mgfK cwlO
bmrA nagA nagBA cypX
pchC pchR minJ ftsX
ftsE nasA tagV tagO
tuaH tuaG tuaF tuaE
tuaD tuaC tuaB tuaAc
tuaAn lytC lytB yciB
lytA tagU mnaA gtaB
ggaB ggaA tagH tagG
tagF tagE tagD tagA
tagB tagC zinU lytD
tagT pgdS edmS yckA
capA capC capB rbsD
rbsA rbsC rbsB yckB
chrB chrA mbl pucI
amtB bcrC spoIID murAA
racA murAB ywjA narK
albC albD pbpG rocC
sacP nirC rodA tcyC
ywcD vbfA efeB tcyB
efeM efeU tcyA ywbA
sacX dltA dltB dltC
dltD dltE licA licC
licB yxlG yxlF yxlA
cydD cydC cimH msmX
dtpT yxjC nupG citH
wapA bglP hutM nupC
yxeO yxeN yclH yxeM
yclI frxB tpeM tpeL
iolF csbC gntP ptsJ
liaM liaL pbtN rocE
walJ walI walH pbtO
walK walR pbtP pbtQ
ycnB yybL yybK yybJ
tetB nocA glcU cutJ
cutR mtlA mtlF pxpG
pbpC amj kimA mntH
dctP ydbJ ydbK fbpB
ydbO ddlA murF alrA
cwlT yabE yddS ydeG
ydeR arsF mneP ydgF
ydgH ydgK ydhB spoL
pbuE gmuB gmuA gmuC
spoVG glmU ydiF gutP
iolT walM gabP mneS
pbuG yabM yecA opuE
dagK divIC yesO rhgP
rhgQ lplA lplB lplC
hmoA calJ ltaSA yfnC
mtrA ettA copO ettM
yfmI fecF fecE fecD
fecC maeS citM nagP
ltaSB yflA treP ftsH
yfkL yfkF chaA pdaA
yfjQ malP yfiB yfiC
yfiG
SW 1.1 Cell envelope and cell division
csbB yfhO pgcA lytF
lytE dat pbpF mblK
wprA disA fabF cwlQ
pdaC yjoB xlyB pghB
xepA xlyA aeeB eepC
ykvT pbpH dapX ltdD
dapH dapI mreBH ftsW
coaD ftsL pbpB spoVD
murE mraY murD spoVE
murG murB divIB ftsA
ftsZ ylmD sepF divIVA
rsgA plsX uppS rasP
asd dapG dapA rodZ
pbpX dacA cwlD pghC
cwlC pghL dinK yngB
dacC iseA ggt walL
nagZ cwlS amiE murP
ldcB yodL murR murQ
pghZ glmM glmS cwlP
blyA ugtP dynA gpsB
ponA tseB dapB ypbE
dacB dacF spoIIM mciZ
yqiI yqgT ltaSC ybfG
pbpA unpK floA spoIIP
cwlH cwlA gamP gamA
gamR murI yrrS pbpI
yrrL yrvJ spoVB minD
minC mreD mreC mreB
maf ysoA rcmE cwlJ
zapA lytT lytS ezrA
refZ murC sftA murJ
ytkC cwlK floT nfeDB
lytG yubA pbpD yueF
dapF lytH fisB ltaSP
pbpE whiA mgfK cwlO
nagA nagBA minJ ftsX
ftsE tagV tagO tuaH
tuaG tuaF tuaE tuaD
tuaC tuaB tuaAc tuaAn
lytC lytB yciB lytA
tagU mnaA gtaB ggaB
ggaA tagH tagG tagF
tagE tagD tagA tagB
tagC lytD tagT pgdS
edmS capA capC capB
mbl bcrC spoIID murAA
racA murAB pbpG rodA
ywcD dltA dltB dltC
dltD dltE wapA walJ
walI walH walK walR
nocA pbpC amj ddlA
murF alrA cwlT yabE
spoL spoVG glmU walM
yabM dagK divIC ltaSA
ltaSB ftsH pdaA
SW 1.1.1 Cell wall synthesis
csbB yfhO pgcA lytE
dat pbpF pbpH dapX
ltdD dapH dapI pbpB
spoVD murE mraY murD
spoVE murG murB ylmD
uppS asd dapG dapA
pbpX dacA dacC ldcB
glmM glmS ponA dapB
dacB dacF ltaSC pbpA
unpK murI pbpI spoVB
rcmE murC murJ pbpD
dapF ltaSP pbpE mgfK
cwlO ftsX ftsE tagV
tagO tuaH tuaG tuaF
tuaE tuaD tuaC tuaB
tuaAc tuaAn yciB tagU
mnaA gtaB ggaB ggaA
tagH tagG tagF tagE
tagD tagA tagB tagC
tagT bcrC murAA murAB
pbpG ywcD dltA dltB
dltC dltD dltE walJ
pbpC amj ddlA murF
alrA glmU yabM dagK
ltaSA ltaSB
SW 1.1.1.1 Biosynthesis of peptidoglycan
dat dapX ltdD dapH
dapI murE mraY murD
spoVE murG murB ylmD
asd dapG dapA ldcB
glmM glmS dapB murI
spoVB rcmE murC murJ
dapF mgfK yciB murAA
murAB walJ amj ddlA
murF alrA glmU yabM
SW 1.1.1.2 Autolytic activity required for peptidoglycan synthesis (cell elongation)
lytE cwlO ftsX ftsE
SW 1.1.1.3 Biosynthesis of lipoteichoic acid
csbB yfhO ltaSC unpK
ltaSP dagK ltaSA ltaSB
SW 1.1.1.4 Biosynthesis of teichoic acid
pgcA tagO mnaA gtaB
ggaB ggaA tagH tagG
tagF tagE tagD tagA
tagB tagC ywcD dltA
dltB dltC dltD dltE
SW 1.1.1.5 Biosynthesis of teichuronic acid
tuaH tuaG tuaF tuaE
tuaD tuaC tuaB tuaAc
tuaAn
SW 1.1.1.6 Export of anionic polymers and attachment to peptidoglycan
tagV tagU tagH tagG
tagT
SW 1.1.1.7 Penicillin-binding proteins
pbpF pbpH pbpB spoVD
pbpX dacA dacC ponA
dacB dacF pbpA pbpI
pbpD pbpE pbpG pbpC
SW 1.1.1.8 Biosynthesis of the carrier lipid undecaprenylphosphate
uppS bcrC
SW 1.1.2 Cell shape
mreBH rodZ dynA mreD
mreC mreB yubA yueF
mgfK mbl rodA
SW 1.1.3 Cell wall degradation/ turnover
lytF lytE cwlQ xlyB
xepA xlyA ykvT iseA
walL nagZ cwlS amiE
murP murR murQ cwlP
blyA yqiI yqgT cwlH
cwlA gamP gamA gamR
lytT lytS ytkC cwlK
lytG lytH pbpE cwlO
nagA nagBA lytC lytB
lytA lytD cwlT
SW 1.1.3.1 Autolysis
lytF lytE cwlQ xlyB
xepA xlyA iseA walL
cwlS cwlP blyA cwlH
cwlA lytT lytS cwlK
lytG pbpE cwlO lytC
lytB lytA lytD cwlT
SW 1.1.3.2 Autolysis/ based on similarity
ykvT ytkC
SW 1.1.3.3 Utilization of cell wall components
nagZ amiE murP murR
murQ yqiI gamP gamA
gamR nagA nagBA
SW 1.1.3.4 Endopeptidases
lytF lytE cwlS yqgT
cwlK lytH cwlO
SW 1.1.3.5 N-acetyl-β-D-glucosaminidases
lytG lytD
SW 1.1.3.6 Cell wall degradation/ turnover/ Additional genes
yqiI
SW 1.1.4 Capsule biosynthesis and degradation
pghB pghC pghL ggt
pghZ pgdS edmS capA
capC capB
SW 1.1.5 Cell wall/ other
wprA pdaC aeeB eepC
rsgA cwlD cwlC spoIIM
yqgT spoIIP yrrL cwlJ
lytH spoIID wapA walI
walH walK walR walM
pdaA
SW 1.1.6 Cell wall/ other/ based on similarity
coaD yngB ybfG yrvJ
yabE spoL
SW 1.1.7 Membrane dynamics
fabF dynA floA mreB
floT nfeDB fisB
SW 1.1.8 Cell division
mblK disA ftsW ftsL
pbpB divIB ftsA ftsZ
sepF divIVA plsX rasP
dinK yodL ugtP dynA
gpsB tseB ypbE mciZ
yrrS minD minC maf
ysoA zapA ezrA refZ
sftA whiA minJ racA
walJ nocA spoVG divIC
ftsH
SW 1.1.8.1 The Min system
divIVA minD minC minJ
SW 1.1.8.2 Other genes
mblK disA ftsW ftsL
pbpB divIB ftsA ftsZ
sepF divIVA plsX rasP
dinK yodL ugtP dynA
gpsB tseB ypbE mciZ
yrrS maf ysoA zapA
ezrA refZ sftA whiA
racA walJ nocA spoVG
divIC ftsH
SW 1.1.9 Cell division/ based on similarity
yjoB
SW 1.2 Transporters
bifL bifM bifN yfiS
yfiU sxzY sxzZ sxzA
yfhI ygaD ssuB ssuA
ssuC yhcA yhcE yhcG
yhcH yhcI yhcJ tcyP
glpF bcaP crcBA crcBB
bmrC bmrD khtU khtT
yhaQ yhaP trpP ecsA
ecsB gltT yhfQ bioY
yhjB glcP yhjP yisQ
yitG appD appF appAn
appAc appB appC oppA
oppB oppC oppD oppF
yjbB manP yjkA yjkB
exuM exuT yjnA pitB
steT dppB dppC dppD
dppE ykfD gdnC gdnD
thiX thiW thiV thiU
mgtE ktrD pfeT ptsG
ptsH ptsI yknU yknV
skiY skiZ fruA ykpA
ktrC spoVV pyrP cysP
ecfA ecfAB ecfT bcbE
ebrB ebrA xynP alsT
yoeA yoaB ybaR ybaS
feuC feuB feuA mdtK
yodF murP sunT dinF
queP ybcL pbuX kdgT
ypqE skfE skfF fmnP
ybxG mleN ybeC artR
artQ artP bmr glpT
yqxL pstBB pstBA pstA
pstC pstS yqeW arsB
gltP gamP yrkJ blt
ybgF czcD brnQ azlD
azlC glnT yraO levG
levF levE levD aapA
yrhG gudP glnQ glnH
glnM glnP alaP ycbK
ycbN cstA araQ araP
araN pftB pftA lmrB
ytnM tcyN tcyM tcyL
tcyK tcyJ braB natA
pbuO ythQ ythP opuD
natB rmgP ytcQ ytcP
yccK msmE msmF msmG
bceB bceA ytrF ytrE
ytrD ytrC ytrB ytnA
ytlA ytlC ytlD mntD
mntC mntB mntA znuA
znuC thiT znuB ktrA
ktrB nupO nupP nupQ
maeN mrpA mrpB mrpC
mrpD mrpE mrpF mrpG
niaP yceJ bioYB opuAA
opuAB opuAC yunE pucJ
pucK frlP frlM frlN
frlO sufC metQ metP
metN lctP mdtP mdr
feuV yvrA yvrB yvrC
ycgH yvrN yvrO fhuC
fhuG fhuB fhuD yvgK
modA modB nhaK cadA
copA copZ yvaD yvaE
opuBC opuBB opuBA opuCD
opuCC opuCB opuCA araE
yvbW yvfS yvfR ganP
ganS lutP epsK putP
aspP psmA psmB mdxG
mdxF mdxE psdB psdA
bmrA ftsX ftsE nasA
tagH tagG yckA rbsD
rbsA rbsC rbsB yckB
chrB chrA pucI amtB
ywjA narK albC albD
rocC sacP nirC tcyC
vbfA tcyB efeM efeU
tcyA ywbA sacX dltB
licA licC licB yxlG
yxlF yxlA cydD cydC
cimH msmX dtpT yxjC
nupG citH bglP hutM
nupC yxeO yxeN yclH
yxeM yclI frxB tpeM
tpeL iolF csbC gntP
ptsJ liaM liaL pbtN
rocE pbtO pbtP pbtQ
ycnB yybL yybK yybJ
tetB glcU cutJ mtlA
mtlF pxpG kimA mntH
dctP ydbJ ydbK ydbO
yddS ydeG ydeR arsF
mneP ydgF ydgH ydgK
ydhB pbuE gmuB gmuA
gmuC ydiF gutP iolT
gabP mneS pbuG yecA
opuE yesO rhgP rhgQ
lplA lplB lplC yfnC
mtrA ettA copO ettM
yfmI fecF fecE fecD
fecC maeS citM nagP
yflA treP yfkL yfkF
chaA malP yfiB yfiC
yfiG
SW 1.2.1 ABC transporters
bifL bifM bifN sxzY
sxzZ sxzA ygaD ssuB
ssuA ssuC yhcE yhcG
yhcH yhcI yhcJ bmrC
bmrD yhaQ yhaP ecsA
ecsB yhfQ yhjP appD
appF appAn appAc appB
appC oppA oppB oppC
oppD oppF yjkA yjkB
dppB dppC dppD dppE
ykfD yknU yknV skiY
skiZ ykpA feuC feuB
feuA sunT skfE skfF
artR artQ artP pstBB
pstBA pstA pstC pstS
glnQ glnH glnM glnP
ycbN araQ araP araN
tcyN tcyM tcyL tcyK
tcyJ natA ythQ ythP
natB rmgP ytcQ ytcP
msmE msmF msmG bceB
bceA ytrF ytrE ytrD
ytrC ytrB ytlA ytlC
ytlD mntD mntC mntB
mntA znuA znuC znuB
nupO nupP nupQ opuAA
opuAB opuAC frlP frlM
frlN frlO sufC metQ
metP metN feuV yvrA
yvrB yvrC yvrN yvrO
fhuC fhuG fhuB fhuD
modA modB opuBC opuBB
opuBA opuCD opuCC opuCB
opuCA yvfS yvfR ganP
ganS mdxG mdxF mdxE
psdB psdA bmrA ftsX
ftsE tagH tagG yckA
rbsD rbsA rbsC rbsB
yckB ywjA albC albD
tcyC tcyB tcyA yxlG
yxlF cydD cydC msmX
yxeO yxeN yclH yxeM
yclI frxB tpeM tpeL
liaM liaL pbtN pbtO
pbtP pbtQ yybL yybK
yybJ ydbJ ydbK ydiF
yesO rhgP rhgQ lplA
lplB lplC ettA ettM
fecF fecE fecD fecC
yfiB yfiC
SW 1.2.1.1 Importers
sxzY sxzZ sxzA ssuB
ssuA ssuC yhfQ appD
appF appAn appAc appB
appC oppA oppB oppC
oppD oppF dppB dppC
dppD dppE ykfD feuC
feuB feuA artR artQ
artP pstBB pstBA pstA
pstC pstS glnQ glnH
glnM glnP araQ araP
araN tcyN tcyM tcyL
tcyK tcyJ rmgP ytcQ
ytcP msmE msmF msmG
mntD mntC mntB mntA
znuA znuC znuB nupO
nupP nupQ opuAA opuAB
opuAC frlP frlM frlN
frlO metQ metP metN
feuV yvrA yvrB yvrC
fhuC fhuG fhuB fhuD
modA modB opuBC opuBB
opuBA opuCD opuCC opuCB
opuCA ganP ganS mdxG
mdxF mdxE rbsD rbsA
rbsC rbsB tcyC tcyB
tcyA msmX yxeO yxeN
yxeM frxB pbtN pbtO
pbtP pbtQ yesO rhgP
rhgQ fecF fecE fecD
fecC
SW 1.2.1.1.1 Uptake of carbon sources
araQ araP araN rmgP
ytcQ ytcP msmE msmF
msmG nupO nupP nupQ
frlP frlM frlN frlO
ganP ganS mdxG mdxF
mdxE rbsD rbsA rbsC
rbsB msmX yesO rhgP
rhgQ
SW 1.2.1.1.2 Uptake of amino acids
artR artQ artP glnQ
glnH glnM glnP tcyN
tcyM tcyL tcyK tcyJ
metQ metP metN tcyC
tcyB tcyA yxeO yxeN
yxeM
SW 1.2.1.1.3 Uptake of peptides
appD appF appAn appAc
appB appC oppA oppB
oppC oppD oppF dppB
dppC dppD dppE ykfD
SW 1.2.1.1.4 Uptake of compatible solutes for osmoprotection
opuAA opuAB opuAC opuBC
opuBB opuBA opuCD opuCC
opuCB opuCA
SW 1.2.1.1.5 Uptake of iron/ siderophores
sxzY sxzZ sxzA yhfQ
feuC feuB feuA feuV
fhuC fhuG fhuB fhuD
frxB pbtN pbtO pbtP
pbtQ fecF fecE fecD
fecC
SW 1.2.1.1.6 Uptake of ions
ssuB ssuA ssuC pstBB
pstBA pstA pstC pstS
mntD mntC mntB mntA
znuA znuC znuB modA
modB
SW 1.2.1.1.7 Uptake of cofactors
yvrA yvrB yvrC
SW 1.2.1.2 Exporters
bifL bifM bifN ygaD
yhcE yhcG yhcH yhcI
bmrC bmrD yhaQ yhaP
yknU yknV skiY skiZ
sunT skfE skfF ycbN
natA ythQ ythP natB
bceB bceA yvrN yvrO
yvfS yvfR psdB psdA
bmrA tagH tagG ywjA
albC albD yxlG yxlF
yclH yclI tpeM tpeL
liaM liaL yybL yybK
yybJ ydbJ ydbK yfiB
yfiC
SW 1.2.1.2.1 Efflux of antibiotics
bifL bifM bifN bmrC
bmrD bmrA
SW 1.2.1.2.2 Export of antibiotic substances
sunT albC albD
SW 1.2.1.2.3 Export of peptides
skiY skiZ skfE skfF
bceB bceA psdB psdA
yxlG yxlF tpeM tpeL
liaM liaL
SW 1.2.1.2.4 Export of cell wall components
tagH tagG
SW 1.2.1.2.5 Export of ions
natA natB
SW 1.2.1.2.6 Exporters of unknown function
ygaD yhcE yhcG yhcH
yhcI yhaQ yhaP yknU
yknV ycbN ythQ ythP
yvrN yvrO yvfS yvfR
ywjA yclH yclI yybL
yybK yybJ ydbJ ydbK
yfiB yfiC
SW 1.2.1.3 Regulatory ABC transporters
bmrC bmrD ecsA ecsB
sufC ftsX ftsE cydD
cydC
SW 1.2.1.4 Unknown ABC transporters
yhcJ yhjP yjkA yjkB
ykpA ytrF ytrE ytrD
ytrC ytrB ytlA ytlC
ytlD yckA yckB ydiF
lplA lplB lplC ettA
ettM
SW 1.2.2 Phosphotransferase system
manP ptsG ptsH ptsI
fruA murP ypqE gamP
levG levF levE levD
sacP ywbA sacX licA
licC licB bglP ptsJ
mtlA mtlF gmuB gmuA
gmuC nagP treP malP
SW 1.2.2.1 General PTS proteins
ptsH ptsI
SW 1.2.2.2 Sugar specific PTS proteins
manP ptsG fruA murP
ypqE gamP levG levF
levE levD sacP ywbA
sacX licA licC licB
bglP ptsJ mtlA mtlF
gmuB gmuA gmuC nagP
treP malP
SW 1.2.3 ECF transporter
trpP bioY thiX thiW
thiV thiU ecfA ecfAB
ecfT fmnP thiT bioYB
SW 1.2.3.1 The general components of the ECF transporters
ecfA ecfAB ecfT
SW 1.2.3.2 The substrate-specific S components of the ECF transporters
trpP bioY fmnP thiT
bioYB
SW 1.2.3.3 Class I ECF transporter
thiX thiW thiV thiU
SW 1.2.4 Transporters/ other
yfiS yfiU yfhI yhcA
tcyP glpF bcaP crcBA
crcBB khtU khtT gltT
yhjB glcP yisQ yitG
yjbB exuM exuT yjnA
pitB steT gdnC gdnD
mgtE ktrD pfeT ktrC
spoVV pyrP cysP bcbE
ebrB ebrA xynP alsT
yoeA yoaB ybaR ybaS
mdtK yodF dinF queP
ybcL pbuX kdgT ybxG
mleN ybeC bmr glpT
yqxL yqeW arsB gltP
yrkJ blt ybgF czcD
brnQ azlD azlC glnT
yraO aapA yrhG gudP
alaP ycbK cstA pftB
pftA lmrB ytnM braB
pbuO opuD yccK ytnA
ktrA ktrB maeN mrpA
mrpB mrpC mrpD mrpE
mrpF mrpG niaP yceJ
yunE pucJ pucK lctP
mdtP mdr ycgH yvgK
nhaK cadA copA copZ
yvaD yvaE araE yvbW
lutP epsK putP aspP
psmA psmB nasA chrB
chrA pucI amtB narK
rocC nirC vbfA efeM
efeU dltB yxlA cimH
dtpT yxjC nupG citH
hutM nupC iolF csbC
gntP rocE ycnB tetB
glcU cutJ pxpG kimA
mntH dctP ydbO yddS
ydeG ydeR arsF mneP
ydgF ydgH ydgK ydhB
pbuE gutP iolT gabP
mneS pbuG yecA opuE
yfnC mtrA copO yfmI
maeS citM yflA yfkL
yfkF chaA yfiG
SW 1.2.4.1 Amino acid transporters
tcyP bcaP gltT steT
cysP alsT yodF ybxG
gltP ybgF brnQ azlD
azlC glnT aapA alaP
braB ytnA yvbW putP
aspP rocC vbfA hutM
rocE ydgF opuE
SW 1.2.4.1.1 Solute:sodium symporter family
gltT alsT yodF glnT
putP vbfA opuE
SW 1.2.4.1.2 Other amino acid transporters
tcyP bcaP steT cysP
ybxG gltP ybgF brnQ
azlD azlC aapA alaP
braB ytnA yvbW aspP
rocC hutM rocE ydgF
SW 1.2.4.10 Siderophore exporters
bcbE
SW 1.2.4.11 Other exporters
yhcA crcBA crcBB gdnC
gdnD bmr blt mdr
epsK chrB chrA narK
ycnB mneS
SW 1.2.4.12 Other transporters
yfiS yfiU yfhI yhjB
yitG yjbB yjnA spoVV
ybaS queP ybcL ybeC
yrkJ ycbK cstA lmrB
ytnM yccK yceJ yunE
ycgH yvgK dltB csbC
tetB pxpG ydbO yddS
ydeG ydeR ydgH ydgK
ydhB yecA yfnC mtrA
copO yfmI yflA yfkL
yfkF
SW 1.2.4.13 Metal ion exporters
mneP mneS
SW 1.2.4.14 Multidrug exporters
ebrB ebrA yvaD yvaE
psmA psmB
SW 1.2.4.15 Multidrug exporters/ based on homology
yisQ yoeA mdtK dinF
SW 1.2.4.2 Peptide transporter
dtpT
SW 1.2.4.3 Carbohydrate transporter
glpF glcP exuM exuT
xynP kdgT glpT gudP
mdtP araE iolF gntP
glcU gutP iolT yfiG
SW 1.2.4.4 Transporter for organic acids
yoaB ybaR mleN yraO
yrhG pftB pftA maeN
lctP lutP cimH yxjC
citH dctP gabP maeS
citM
SW 1.2.4.5 Metal ion transporter
khtU khtT mgtE ktrD
pfeT ktrC yqxL arsB
czcD ktrA ktrB mrpA
mrpB mrpC mrpD mrpE
mrpF mrpG nhaK cadA
copA copZ efeM efeU
cutJ kimA mntH arsF
chaA
SW 1.2.4.6 Nucleotide/ nucleoside transporter
pyrP pbuX pbuO pucJ
pucK pucI yxlA nupG
nupC pbuE pbuG
SW 1.2.4.7 Transporter for cofactors
niaP
SW 1.2.4.8 Uptake of other small ions
pitB yqeW nasA amtB
nirC
SW 1.2.4.9 Uptake of compatible solutes
opuD opuE
SW 1.3 Homeostasis
sxzY sxzZ sxzA yhdP
cueR nhaC khtU khtT
khtS hmoB yhfQ yhjQ
kefQ mgtE ktrD ktrC
tcaB bcbE eesA feuC
feuB czrA feuA btr
S834 fur mntR yqxL
zur yrdP czcD zinT
ytpQ natR natA natB
ytoA dps mntD mntC
mntB mntA znuA znuC
znuB ktrA ktrB kbfO
mrpA mrpB mrpC mrpD
mrpE mrpF mrpG dhbF
dhbB dhbE dhbC dhbA
besA feuV mrgA fhuC
fhuG fhuB fhuD modA
modB nhaK copA copZ
csoR cypX pchC pchR
zinU efeB efeM efeU
frxB pbtN pbtO pbtP
pbtQ cutJ cutR kimA
mntH fbpB mneP mneS
hmoA calJ fecF fecE
fecD fecC citM chaA
yfjQ
SW 1.3.1 Metal ion homeostasis (K, Na, Ca, Mg)
yhdP nhaC khtU khtT
khtS kefQ mgtE ktrD
ktrC tcaB yqxL natR
natA natB ktrA ktrB
kbfO mrpA mrpB mrpC
mrpD mrpE mrpF mrpG
nhaK kimA calJ citM
chaA yfjQ
SW 1.3.1.1 Magnesium uptake/ efflux
yhdP mgtE citM yfjQ
SW 1.3.1.2 Sodium uptake/ export
nhaC natR natA natB
mrpA mrpB mrpC mrpD
mrpE mrpF mrpG nhaK
SW 1.3.1.3 Potassium uptake/ export
khtU khtT khtS kefQ
ktrD ktrC ktrA ktrB
kbfO kimA
SW 1.3.1.4 Metal ion homeostasis/ Other
tcaB yqxL calJ chaA
SW 1.3.2 Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo)
cueR yhjQ czrA mntR
zur yrdP czcD zinT
mntD mntC mntB mntA
znuA znuC znuB modA
modB copA copZ csoR
zinU cutJ cutR mntH
mneP mneS
SW 1.3.2.1 Copper
cueR yhjQ copA copZ
csoR cutJ cutR
SW 1.3.2.2 Manganese
mntR mntD mntC mntB
mntA mntH mneP mneS
SW 1.3.2.3 Zinc
czrA zur czcD zinT
znuA znuC znuB zinU
SW 1.3.2.4 Trace metals/ Other
yrdP modA modB
SW 1.3.3 Acquisition of iron
sxzY sxzZ sxzA hmoB
yhfQ bcbE eesA feuC
feuB feuA btr S834
fur ytpQ dps dhbF
dhbB dhbE dhbC dhbA
besA feuV mrgA fhuC
fhuG fhuB fhuD cypX
pchC pchR efeB efeM
efeU frxB pbtN pbtO
pbtP pbtQ fbpB hmoA
fecF fecE fecD fecC
SW 1.3.3.1 ABC transporters for the uptake of iron/ siderophores
sxzY sxzZ sxzA yhfQ
feuC feuB feuA feuV
fhuC fhuG fhuB fhuD
frxB pbtN pbtO pbtP
pbtQ fecF fecE fecD
fecC
SW 1.3.3.2 Elemental iron transport system
efeB efeM efeU
SW 1.3.3.3 Acquisition of iron / Other
hmoB yhfQ bcbE eesA
btr S834 fur ytpQ
dps dhbF dhbB dhbE
dhbC dhbA besA mrgA
cypX pchC pchR fbpB
hmoA
SW 1.3.4 Acquisition of iron/ based on similarity
ytoA
SW 1.3.5 PH homeostasis
nhaC
SW 2 Metabolism
pabB estB pabA mprF
sxzY sxzZ sxzA pabC
folP csbB yfhO fabL
folB gsaB folK thiC
senS ssuB ssuA ssuC
ssuD yhcA dgcK tcyP
mncR glpP glpF glpK
glpD pgcA phoA bcaP
akrN plsC yhdW dat
hemZ trpP serC hmoB
hemE hemH hemY fabHB
gltT lplJ lcfB aprE
yhfQ phoE bioY yhfW
ntdC ntdB ntdA ntdR
radA asnO farP iolQ
iolX disA yisZ yitA
yitB samT ispD nprB
fakBB ribZC yitW ispF
argC argJ argB argD
carA carB argF fabHA
fabF appD appF appB
appC cysE oppA oppB
oppC oppD oppF relP
ppnKA tenA tenI thiO
thiS thiG thiF thiD
fabI metI metC manR
manP manA ctaO yjgC
cypE ndh uxaC exuM
yjmC yjmD uxuA uxuB
exuT exuR uxaB uxaA
pitB proCC dppA dppB
dppC dppD dppE ykfD
pgl hmpA purU proB
proA guaN metE ispA
thiX thiW thiV thiU
tnrA dgcW mtnA mtnK
mtnU mtnE mtnW mtnX
mtnB mtnD pfeT papB
glcT ptsG dapX ltdD
fadH ykuG ccpC fldN
fldP dapH dapI ahpA
mobA moeB moeA mobB
moaE moaD fruR fruK
fruA adeC defB pdhA
pdhB pdhC pdhD rgpA
speA nprE glsB pycA
ctaA ctaB ctaC ctaD
ctaE ctaF ctaG panE
bshC murE mraY murD
spoVE guaB murG murB
bpr thiQ ylmD adk
pyrR pyrP pyrB pyrC
pyrAA pyrAB pyrK pyrD
pyrF pyrE cysH cysP
sat cysC sumT sirB
sirC gmk coaBC rsgA
rpe thiN yloV sdaAB
sdaAA fapR plsX fabD
fabG acpA sucC sucD
pyrH uppS cdsA dxr
ribC spoVFA spoVFB asd
dapG dapA bcbE pgsA
tdh kbl pksB pksC
pksD pksE acpK pksF
pksG pksH pksI pksJ
pksL pksM pksN pksR
pksS aprX nrdI nrdE
nrdF glnR glnA xynP
xynB xylR xylA xylB
dutA thyA pdxS tktA
ccdA citB yneN sspT
plsY alsT eglS xynC
xynD ldeE ldeF ldeG
lgeHB ldeHA ldeI ldeJ
ppsE ppsD ppsC ppsB
ppsA galM gltB gltA
gltC proJ proH yoaB
yoaD yoaE pelB yoaV
ybaR xynA eesA feuC
feuB feuA desE desK
desR btr odhB odhA
yojN cdaS bshBB pdxT
noxC yodF murP ldcB
deoD murR murQ phyC
dutB yosR nrdEB nrdEB
cdaA cdaR glmM glmS
sunS sunT sunA ndhF
scuA ilvA dfrA thyB
ilvD hdhQ metAA ugtP
S834 bpsB bpsA pbuX
xpt ybcM kdgT kdgA
kdgK kdgR kduI kduD
aspB panD panC panB
birA bshA bshBA mgsA
dapB qcrC qcrB qcrA
aroA tyrA hisC trpA
trpB trpF trpC trpD
trpE aroH aroB aroF
ndk hepT menG hepS
mtrB folEA gpsA fni
cmk gudB dck fer
fmnP serA aroC resE
resD resC resB resA
ribH ribBA ribE ribD
lysA pupG deoB fur
mleA mleN ansB ansA
ansR nudF cypC coaA
proI dgk zwf gndA
artR artQ artP glpQA
bkdB bkdAB bkdAA lpdV
buk bcd ptb glpT
bkdR mmgF mmgE mmgD
mmgC mmgB mmgA glpQ
argR dxs ispA yqhY
accC accB papA lipM
gcvPB gcvPA gcvT ltaSC
glcK pstBB pstBA pstA
pstC pstS ispG ispH
cccA purT ppsR ccpN
mpr cdd unpK pgpH
yqeW cesB hemN pssA
nadD aroE psd nucB
gamP gamA gamR yrkL
ilvE bltR blt bltD
ybgF brnQ azlD azlC
azlB ybgG cypA glnT
murI yraO glsA csn
glnJ sacC glnL levG
levF levE levD levR
kdgD cypB bscR gucD
mccB gudP mccA mtnN
udk gudD glnQ garR
glnH glnM glnP garD
cymR rsh apt spoVB
alaP rtpA nadA nadC
nadB nifS niaR pheA
thrR folC hemL hemB
hemD hemC hemX hemA
leuD leuC leuB leuA
ilvC ilvH ilvB rcmE
sdhB sdhA sdhC lysCA
trxA abfB etfA etfB
fadB fadR lcfA cstA
abfA araQ araP araN
araD araB araA phoD
abnA frvX pftB tatAD
pftA ysaA tatCD speD
gapB coaE phoR phoP
mdh icd citZ pyk
pfkA accA accD maeB
sndA ribR cmoJ cmoI
cmoO tcyN tcyM tcyL
tcyK tcyJ snaA ascR
argH ansZ argG moaB
ackA estA ppnKB braB
hisK dgcP acsA acuA
acuC aroX murC ytpQ
ytpP maeC amyX pbuO
murJ rmgQ rmgP ytcQ
ytcP bioI bioB bioD
bioFC bioK bioW msmR
msmE msmF msmG melA
ytoA ytnA asnB metK
pckA dps luxS ythA
ythB menC menE menB
menH menD menF glgP
glgA glgD glgC glgB
thiT gbsB gbsA gbsR
iolU rhaA rhaM rhaB
rhaR rhaE yugT pgi
patB maeL maeM nupN
nupO nupP nupQ maeN
pdeH pncB niaP pncA
adeR ald dhbF dhbB
dhbE dhbC dhbA besA
trxBB guaC paiA sufA
dapF yutK yutJ thrB
thrC hom lipA pucH
pucR pucJ pucK pucL
pucM pucE pucD pucC
pucB pucA pucG pucF
bsnA frlP frlR frlD
frlM frlN frlO frlB
amyE sufB sufU sufS
sufD sufC lctE metQ
metP metN yusE gcvH
lctP fadE fadA fadN
putM feuV mrgA fumC
yvqK yvrA yvrB yvrC
fhuC fhuG fhuB fhuD
lysP ltaSP nadE cysI
cysJ iolW rnr aroK
eno pgm tpiA pgk
gapA cggR araE araR
cyeB lutC lutB lutA
ganB ganA ganQ ganP
ganS ganR lutR putB
lutP putC putP pnbA
sacB levB aspP cotR
mdxM putR mdxL mdxK
mdxG mdxF mdxE mdxD
mdxR mgfK trxB hisIE
hisF hisA hisH hisB
hisD hisG ffoR pelC
nagA nagBA nasF nagR
cypX pchC nasE nasD
cccB nasC nasB nasA
fakBA tagO tuaH folEB
tuaG tuaF tuaE tuaD
tuaC tuaB tuaAc tuaAn
yciB mnaA gtaB ggaB
ggaA tagH tagG tagF
tagE tagD tagA tagB
tagC pmiA ribZB rbsR
rbsK rbsD rbsA rbsC
rbsB ywrO alsD alsS
alsR bglC fabZ pucI
amtB glnK bcrC clsA
ureC ureB ureA moaA
murAA atpC atpD atpG
atpA atpH atpF atpE
atpB atpI upp glyA
rpiB maeA tdk srfAA
glpX murAB tal fbaA
pyrG srfAB acdA fadF
clsB clsC narI narJ
narH narG arfM fnr
narK srfAC sboA sboX
albA albB albC albD
albE albF albG srfAD
speB speE lipL cysL
pta hemQ bacG bacF
bacE bacD bacC bacB
bacA rocC rocB rocA
rocG spsL spsK spsJ
spsI sfpAc sfpAn pdxK
sacA sacP nirC sacT
vpr nfrAA qoxD qoxC
qoxB qoxA tcyC galT
galK ywcD efeB tcyB
efeM efeU thiE thiM
tcyA epr sacX sacY
relQ menA dltA dltB
dltC dltD dltE ilvK
licH licA licC licB
licR yxlA cydD cydC
cydB cydA cimH msmX
galE pepT yxjH dtpT
yxjG scoB scoA nupG
citH bglS licT bglH
bglP abnB hutP hutH
hutU hutI hutG hutM
pdp nupC deoC deoR
sndB yxeO yxeN yxeM
snaB yxeK frxB iolJ
iolI iolH iolG iolF
iolE iolD iolC iolB
iolA iolR iolS asnH
gntR gntK gntP gntZ
bglA fbp thrD pbtN
argI rocE rocD rocR
walJ pbtO purA pbtP
gdpP pbtQ ppaC ycnB
nfrAB maa yyaE gabR
gabT gabD tmk mtlA
mtlF mtlD ycsD ribZ
pxpA pxpG pxpB pxpC
lipC mtlR lyxE amj
dctB dctS dctR dctP
fbpB ydbP ddlA murF
acpS alrA ydeQ cesA
ydfQ ispE purR phoB
fra pbuE gmuB ridA
gmuA gmuC gmuD gmuR
gmuE gmuF gmuG thiL
glmU moaC rex prs
gutR gutB gutP ydjE
iolT bdhA gabP guaA
pbuG yabM purE purK
purB purC purS purQ
purL purF purM purN
purH purD pcrB sapB
dagK yesO rhgP rhgQ
rhgH rhgR rhgT yesV
rhgW rhgX yesY rhgZ
yetA lplD hmoA cypD
ltaSA mtrA fecF fecE
fecD fecC pelA maeS
citS citT citM nosA
yflK nagP hprT ltaSB
treP treA treR hypO
yfkN coaX acoA acoB
acoC acoL acoR malA
malR cysK malP catD
catE yfiG
SW 2.1 Electron transport and ATP synthesis
yhfW yjgC cypE ndh
hmpA fldN fldP ahpA
ctaC ctaD ctaE ctaF
ctaG sucC sucD ccdA
yneN sspT yoaE yojN
noxC yosR ndhF scuA
qcrC qcrB qcrA fer
resE resD resC resB
resA cypC cccA yrkL
cypA cypB bscR trxA
etfA etfB ackA ytpP
ythA ythB trxBB yutJ
yusE pgk trxB ffoR
nasF cypX nasE nasD
cccB ywrO atpC atpD
atpG atpA atpH atpF
atpE atpB atpI narI
narJ narH narG arfM
fnr narK nirC nfrAA
qoxD qoxC qoxB qoxA
cydD cydC cydB cydA
nfrAB yyaE ydbP ydeQ
ydfQ rex cypD hypO
SW 2.1.1 Regulators of electron transport
resE resD arfM fnr
rex
SW 2.1.2 Respiration
ndh ctaC ctaD ctaE
ctaF ctaG ccdA yojN
ndhF scuA qcrC qcrB
qcrA resC resB resA
cccA ythA ythB nasF
nasE nasD cccB narI
narJ narH narG narK
nirC qoxD qoxC qoxB
qoxA cydD cydC cydB
cydA
SW 2.1.2.1 Terminal oxidases
ctaC ctaD ctaE ctaF
ctaG scuA ythA ythB
qoxD qoxC qoxB qoxA
cydD cydC cydB cydA
SW 2.1.2.2 Anaerobic respiration
nasF nasE nasD narI
narJ narH narG narK
nirC
SW 2.1.2.3 Anaerobic respiration/based on similarity
yojN
SW 2.1.2.4 Respiration/ other
ndh ccdA ndhF qcrC
qcrB qcrA resC resB
resA cccA cccB
SW 2.1.3 Electron transport/ other
cypE hmpA fldN fldP
sspT yosR fer cypC
cypB bscR trxA etfA
etfB trxBB trxB nfrAA
nfrAB cypD
SW 2.1.4 Electron transport/ other/ based on similarity
yhfW yjgC ahpA yneN
yoaE noxC yrkL cypA
ytpP yutJ yusE ffoR
cypX ywrO yyaE ydbP
ydeQ ydfQ hypO
SW 2.1.5 ATP synthesis
sucC sucD ackA pgk
atpC atpD atpG atpA
atpH atpF atpE atpB
atpI
SW 2.1.5.1 ATPase
atpC atpD atpG atpA
atpH atpF atpE atpB
atpI
SW 2.1.5.2 Substrate-level phosphorylation
sucC sucD ackA pgk
SW 2.2 Carbon metabolism
senS glpP glpF glpK
glpD iolQ iolX manR
manP manA uxaC exuM
yjmC yjmD uxuA uxuB
exuT exuR uxaB uxaA
pgl glcT ptsG ccpC
fruR fruK fruA pdhA
pdhB pdhC pdhD pycA
rpe sucC sucD xynP
xynB xylR xylA xylB
tktA citB eglS xynC
xynD galM yoaB pelB
ybaR xynA odhB odhA
murP murR murQ ybcM
kdgT kdgA kdgK kdgR
kduI kduD mgsA mleA
mleN zwf gndA glpQA
glpT glcK ppsR ccpN
gamP gamA gamR yraO
csn sacC levG levF
levE levD levR kdgD
gucD gudP gudD garR
garD sdhB sdhA sdhC
abfB cstA abfA araQ
araP araN araD araB
araA abnA frvX pftB
pftA gapB mdh icd
citZ pyk pfkA maeB
ackA acsA acuA acuC
maeC amyX rmgQ rmgP
ytcQ ytcP msmR msmE
msmF msmG melA pckA
iolU rhaA rhaM rhaB
rhaR rhaE yugT pgi
maeL maeM maeN frlP
frlR frlD frlM frlN
frlO frlB amyE lctE
lctP fumC iolW eno
pgm tpiA pgk gapA
cggR araE araR lutC
lutB lutA ganB ganA
ganQ ganP ganS ganR
lutR lutP sacB levB
mdxM mdxL mdxK mdxG
mdxF mdxE mdxD mdxR
pelC nagA nagBA nagR
pmiA rbsR rbsK rbsD
rbsA rbsC rbsB alsD
alsS alsR bglC rpiB
maeA glpX tal fbaA
pta sacA sacP sacT
galT galK sacX sacY
licH licA licC licB
licR cimH msmX galE
citH bglS licT bglH
bglP abnB iolJ iolI
iolH iolG iolF iolE
iolD iolC iolB iolA
iolR iolS gntR gntK
gntP gntZ bglA fbp
maa mtlA mtlF mtlD
mtlR lyxE dctB dctS
dctR dctP gmuB gmuA
gmuC gmuD gmuR gmuE
gmuF gmuG rex gutR
gutB gutP ydjE iolT
bdhA yesO rhgP rhgQ
rhgH rhgR rhgT yesV
rhgW rhgX yesY rhgZ
yetA lplD pelA maeS
citS citT citM nagP
treP treA treR acoA
acoB acoC acoL acoR
malA malR malP yfiG
SW 2.2.1 Carbon core metabolism
pgl glcT ptsG ccpC
pdhA pdhB pdhC pdhD
pycA rpe sucC sucD
tktA citB odhB odhA
mgsA zwf gndA ppsR
ccpN sdhB sdhA sdhC
gapB mdh icd citZ
pyk pfkA ackA pckA
pgi lctE lctP fumC
eno pgm tpiA pgk
gapA cggR alsD alsS
alsR rpiB glpX tal
fbaA pta fbp rex
bdhA
SW 2.2.1.1 Glycolysis
glcT ptsG mgsA pyk
pfkA pgi eno pgm
tpiA pgk gapA cggR
fbaA
SW 2.2.1.2 Gluconeogenesis
ppsR ccpN gapB pckA
pgi eno pgm tpiA
pgk glpX fbaA fbp
SW 2.2.1.3 Pentose phosphate pathway
pgl rpe tktA zwf
gndA rpiB tal
SW 2.2.1.4 TCA cycle
ccpC pdhA pdhB pdhC
pdhD pycA sucC sucD
citB odhB odhA sdhB
sdhA sdhC mdh icd
citZ fumC
SW 2.2.1.5 Overflow metabolism
ackA lctE lctP alsD
alsS alsR pta rex
bdhA
SW 2.2.2 Utilization of specific carbon sources
senS glpP glpF glpK
glpD iolQ iolX manR
manP manA uxaC exuM
yjmC yjmD uxuA uxuB
exuT exuR uxaB uxaA
fruR fruK fruA xynP
xynB xylR xylA xylB
eglS xynC xynD galM
yoaB pelB ybaR xynA
murP murR murQ ybcM
kdgT kdgA kdgK kdgR
kduI kduD mleA mleN
glpQA glpT glcK gamP
gamA gamR yraO csn
sacC levG levF levE
levD levR kdgD gucD
gudP gudD garR garD
abfB cstA abfA araQ
araP araN araD araB
araA abnA frvX pftB
pftA maeB acsA acuA
acuC maeC amyX rmgQ
rmgP ytcQ ytcP msmR
msmE msmF msmG melA
iolU rhaA rhaM rhaB
rhaR rhaE yugT maeL
maeM maeN frlP frlR
frlD frlM frlN frlO
frlB amyE iolW araE
araR lutC lutB lutA
ganB ganA ganQ ganP
ganS ganR lutR lutP
sacB levB mdxM mdxL
mdxK mdxG mdxF mdxE
mdxD mdxR pelC nagA
nagBA nagR pmiA rbsR
rbsK rbsD rbsA rbsC
rbsB bglC maeA sacA
sacP sacT galT galK
sacX sacY licH licA
licC licB licR cimH
msmX galE citH bglS
licT bglH bglP abnB
iolJ iolI iolH iolG
iolF iolE iolD iolC
iolB iolA iolR iolS
gntR gntK gntP gntZ
bglA maa mtlA mtlF
mtlD mtlR lyxE dctB
dctS dctR dctP gmuB
gmuA gmuC gmuD gmuR
gmuE gmuF gmuG gutR
gutB gutP ydjE iolT
yesO rhgP rhgQ rhgH
rhgR rhgT yesV rhgW
rhgX yesY rhgZ yetA
lplD pelA maeS citS
citT citM nagP treP
treA treR acoA acoB
acoC acoL acoR malA
malR malP yfiG
SW 2.2.2.1 Utilization of organic acids
yoaB ybaR mleA mleN
yraO cstA pftB pftA
maeB acsA acuA acuC
maeC maeL maeM maeN
lutC lutB lutA lutR
lutP maeA cimH citH
dctB dctS dctR dctP
maeS citS citT citM
SW 2.2.2.10 Utilization of mannitol
mtlA mtlF mtlD mtlR
SW 2.2.2.11 Utilization of glucitol
gutR gutB gutP
SW 2.2.2.12 Utilization of rhamnose
rhaA rhaM rhaB rhaR
rhaE
SW 2.2.2.13 Utilization of gluconate
gntR gntK gntP gntZ
SW 2.2.2.14 Utilization of glucarate/galactarate
kdgD gucD gudP gudD
garR garD
SW 2.2.2.15 Utilization of hexuronate
uxaC exuM yjmC yjmD
uxuA uxuB exuT exuR
uxaB uxaA kdgT kdgA
kdgK kdgR kduI kduD
SW 2.2.2.16 Utilization of inositol
iolQ iolX iolU iolW
iolJ iolI iolH iolG
iolF iolE iolD iolC
iolB iolA iolR iolS
iolT yfiG
SW 2.2.2.17 Utilization of amino sugars
murP murR murQ gamP
gamA gamR frlP frlR
frlD frlM frlN frlO
frlB nagA nagBA nagR
nagP
SW 2.2.2.18 Utilization of beta-glucosides
bglC licT bglH bglP
bglA
SW 2.2.2.19 Utilization of sucrose
sacB sacA sacP sacT
sacX sacY ydjE
SW 2.2.2.2 Utilization of acetoin
acoA acoB acoC acoL
acoR
SW 2.2.2.20 Utilization of trehalose
glcK treP treA treR
SW 2.2.2.21 Utilization of melibiose
msmR msmE msmF msmG
melA msmX
SW 2.2.2.22 Utilization of maltose
glcK mdxK malA malR
malP
SW 2.2.2.23 Utilization of starch/ maltodextrin
glcK amyX amyE mdxM
mdxL mdxG mdxF mdxE
mdxD mdxR msmX maa
SW 2.2.2.24 Utilization of galactan
ganB ganA ganQ ganP
ganS ganR msmX
SW 2.2.2.25 Utilization of glucomannan
gmuB gmuA gmuC gmuD
gmuR gmuE gmuF gmuG
SW 2.2.2.26 Utilization of pectin
ybcM rmgQ rmgP ytcQ
ytcP msmX yesO rhgP
rhgQ rhgH rhgR rhgT
yesV rhgW rhgX yesY
rhgZ yetA lplD
SW 2.2.2.27 Utilization of other polymeric carbohydrates
senS eglS xynC xynD
pelB csn sacC levG
levF levE levD levR
frvX yugT levB pelC
licH licA licC licB
licR bglS licT pelA
SW 2.2.2.28 Utilization of other pentoses and hexoses
lyxE
SW 2.2.2.3 Utilization of glycerol/ glycerol-3-phosphate
glpP glpF glpK glpD
glpQA glpT
SW 2.2.2.4 Utilization of ribose
rbsR rbsK rbsD rbsA
rbsC rbsB
SW 2.2.2.5 Utilization of xylan/ xylose
xynP xynB xylR xylA
xylB xynA
SW 2.2.2.6 Utilization of arabinan/ arabinose/ arabitol
abfB abfA araQ araP
araN araD araB araA
abnA araE araR abnB
SW 2.2.2.7 Utilization of fructose
fruR fruK fruA levG
levF levE levD levR
SW 2.2.2.8 Utilization of galactose
galM galT galK galE
SW 2.2.2.9 Utilization of mannose
manR manP manA pmiA
SW 2.3 Amino acid/ nitrogen metabolism
pabA tcyP bcaP trpP
serC gltT aprE asnO
samT nprB argC argJ
argB argD carA carB
argF appD appF appB
appC cysE oppA oppB
oppC oppD oppF metI
metC proCC dppA dppB
dppC dppD dppE ykfD
proB proA metE ispA
tnrA mtnA mtnK mtnU
mtnE mtnW mtnX mtnB
mtnD papB dapX dapH
dapI rgpA nprE glsB
bpr sdaAB sdaAA asd
dapG dapA tdh kbl
aprX glnR glnA citB
alsT ldeE ldeF ldeG
lgeHB ldeHA ldeI ldeJ
gltB gltA gltC proJ
proH yoaD yoaV yodF
murP murR murQ ilvA
ilvD metAA aspB dapB
aroA tyrA hisC trpA
trpB trpF trpC trpD
trpE aroH aroB aroF
mtrB gudB serA aroC
lysA ansB ansA ansR
proI artR artQ artP
bkdB bkdAB bkdAA lpdV
buk bcd ptb bkdR
mmgF mmgE mmgD mmgC
mmgB mmgA argR papA
gcvPB gcvPA gcvT mpr
aroE gamP gamA gamR
ilvE ybgF brnQ azlD
azlC azlB ybgG glnT
glsA glnJ glnL mccB
mccA mtnN glnQ glnH
glnM glnP alaP rtpA
pheA thrR leuD leuC
leuB leuA ilvC ilvH
ilvB lysCA ysaA tcyN
tcyM tcyL tcyK tcyJ
ascR argH ansZ argG
braB hisK aroX ytnA
asnB metK luxS patB
adeR ald dapF thrB
thrC hom frlP frlR
frlD frlM frlN frlO
frlB metQ metP metN
gcvH lysP aroK cyeB
putB putC putP aspP
putR hisIE hisF hisA
hisH hisB hisD hisG
nagA nagBA nasF nagR
nasE nasD nasC nasB
nasA amtB glnK ureC
ureB ureA glyA rocC
rocB rocA rocG vpr
tcyC tcyB tcyA epr
ilvK pepT yxjH dtpT
yxjG hutP hutH hutU
hutI hutG hutM yxeO
yxeN yxeM asnH thrD
argI rocE rocD rocR
gabR gabT gabD pxpG
ridA prs gabP nagP
cysK
SW 2.3.1 Biosynthesis/ acquisition of amino acids
pabA tcyP bcaP trpP
serC gltT asnO samT
argC argJ argB argD
carA carB argF cysE
metI metC proCC proB
proA metE tnrA mtnA
mtnK mtnU mtnE mtnW
mtnX mtnB mtnD dapX
dapH dapI rgpA asd
dapG dapA glnR glnA
alsT gltB gltA gltC
proJ proH yoaD ilvA
ilvD metAA aspB dapB
aroA tyrA hisC trpA
trpB trpF trpC trpD
trpE aroH aroB aroF
mtrB serA aroC lysA
proI artR artQ artP
argR aroE ilvE ybgF
brnQ azlD azlC azlB
ybgG glnT glnJ glnL
mccB mccA mtnN glnQ
glnH glnM glnP alaP
rtpA pheA thrR leuD
leuC leuB leuA ilvC
ilvH ilvB lysCA ysaA
tcyN tcyM tcyL tcyK
tcyJ ascR argH argG
braB hisK aroX ytnA
asnB metK luxS patB
dapF thrB thrC hom
metQ metP metN lysP
aroK putP aspP hisIE
hisF hisA hisH hisB
hisD hisG amtB glnK
glyA rocC tcyC tcyB
tcyA ilvK yxjH yxjG
hutM yxeO yxeN yxeM
asnH thrD rocE ridA
prs cysK
SW 2.3.1.1 Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation
gltT tnrA glnR glnA
alsT gltB gltA gltC
glnT glnJ glnL glnQ
glnH glnM glnP amtB
glnK
SW 2.3.1.10 Biosynthesis/ acquisition of methionine/ S-adenosylmethionine
metI metC metE mtnA
mtnK mtnU mtnE mtnW
mtnX mtnB mtnD metAA
mtnN metK luxS patB
hom metQ metP metN
SW 2.3.1.11 Biosynthesis/ acquisition of methionine/ S-adenosylmethionine/ based on similarity
samT yoaD ybgG yxjH
yxjG
SW 2.3.1.12 Biosynthesis/ acquisition of branched-chain amino acids
bcaP ilvA ilvD ilvE
brnQ azlD azlC azlB
leuD leuC leuB leuA
ilvC ilvH ilvB braB
ilvK ridA
SW 2.3.1.13 Biosynthesis/ acquisition of aromatic amino acids
pabA trpP aroA tyrA
hisC trpA trpB trpF
trpC trpD trpE aroH
aroB aroF mtrB aroC
aroE rtpA pheA aroX
aroK
SW 2.3.1.14 Biosynthesis/ acquisition of histidine
ybgF hisK hisIE hisF
hisA hisH hisB hisD
hisG hutM prs
SW 2.3.1.2 Biosynthesis/ acquisition of proline
proCC proB proA proJ
proH proI putP
SW 2.3.1.3 Biosynthesis/ acquisition of proline/ based on similarity
ytnA
SW 2.3.1.4 Biosynthesis/ acquisition of arginine
argC argJ argB argD
carA carB argF rgpA
artR artQ artP argR
argH argG rocC rocE
SW 2.3.1.5 Biosynthesis/ acquisition of aspartate/ asparagine
asnO aspB asnB aspP
asnH
SW 2.3.1.6 Biosynthesis/ acquisition of lysine/ threonine
dapX dapI asd dapG
dapA dapB lysA thrR
lysCA dapF thrB thrC
hom lysP thrD
SW 2.3.1.7 Biosynthesis/ acquisition of lysine/ threonine/ based on similarity
dapH
SW 2.3.1.8 Biosynthesis/ acquisition of serine/ glycine/ alanine
serC serA alaP ysaA
glyA
SW 2.3.1.9 Biosynthesis/ acquisition of cysteine
tcyP cysE mccB mccA
tcyN tcyM tcyL tcyK
tcyJ ascR tcyC tcyB
tcyA yxeO yxeN yxeM
cysK
SW 2.3.2 Utilization of amino acids
bcaP gltT rgpA glsB
sdaAB sdaAA tdh kbl
citB alsT ldeE ldeF
ldeG lgeHB ldeHA ldeI
ldeJ gudB ansB ansA
ansR bkdB bkdAB bkdAA
lpdV buk bcd ptb
bkdR mmgF mmgE mmgD
mmgC mmgB mmgA argR
gcvPB gcvPA gcvT ybgF
azlD azlC azlB glnT
glsA glnJ glnL glnQ
glnH glnM glnP alaP
ansZ ytnA adeR ald
gcvH putB putC putP
aspP putR rocC rocB
rocA rocG hutP hutH
hutU hutI hutG hutM
argI rocE rocD rocR
gabR gabT gabD gabP
SW 2.3.2.1 Utilization of glutamine/ glutamate
gltT glsB alsT gudB
glnT glsA glnJ glnL
glnQ glnH glnM glnP
rocG
SW 2.3.2.10 Utilization of gamma-amino butyric acid
gabR gabT gabD gabP
SW 2.3.2.2 Utilization of proline
putB putC putP putR
SW 2.3.2.3 Utilization of proline/ based on similarity
ytnA
SW 2.3.2.4 Utilization of arginine/ ornithine
rgpA argR rocC rocB
rocA rocG argI rocE
rocD rocR
SW 2.3.2.5 Utilization of histidine
ybgF hutP hutH hutU
hutI hutG hutM
SW 2.3.2.6 Utilization of asparagine/ aspartate
ansB ansA ansR ansZ
aspP
SW 2.3.2.7 Utilization of alanine/ serine
sdaAB sdaAA alaP adeR
ald
SW 2.3.2.8 Utilization of threonine/ glycine
tdh kbl gcvPB gcvPA
gcvT gcvH
SW 2.3.2.9 Utilization of branched-chain amino acids
bcaP citB ldeE ldeF
ldeG lgeHB ldeHA ldeI
ldeJ bkdB bkdAB bkdAA
lpdV buk bcd ptb
bkdR mmgF mmgE mmgD
mmgC mmgB mmgA azlD
azlC azlB
SW 2.3.3 Utilization of nitrogen sources other than amino acids
aprE nprB appD appF
appB appC oppA oppB
oppC oppD oppF dppA
dppB dppC dppD dppE
ykfD ispA papB nprE
bpr aprX murP murR
murQ papA mpr gamP
gamA gamR frlP frlR
frlD frlM frlN frlO
frlB nagA nagBA nasF
nagR nasE nasD nasC
nasB nasA ureC ureB
ureA vpr epr pepT
dtpT nagP
SW 2.3.3.1 Utilization of nitrate/ nitrite
nasF nasE nasD nasC
nasB nasA
SW 2.3.3.2 Utilization of urea
ureC ureB ureA
SW 2.3.3.3 Utilization of amino sugars
murP murR murQ gamP
gamA gamR frlP frlR
frlD frlM frlN frlO
frlB nagA nagBA nagR
nagP
SW 2.3.3.4 Utilization of peptides
appD appF appB appC
oppA oppB oppC oppD
oppF dppA dppB dppC
dppD dppE ykfD papB
papA pepT dtpT
SW 2.3.3.5 Utilization of proteins
aprE nprB ispA nprE
bpr aprX mpr vpr
epr
SW 2.3.4 Putative amino acid transporter
yoaV yodF cyeB pxpG
SW 2.4 Lipid metabolism
estB mprF fabL glpP
glpD pgcA akrN plsC
yhdW fabHB lcfB phoE
farP ispD fakBB ispF
fabHA fabF fabI cypE
fadH ykuG yloV fapR
plsX fabD fabG acpA
uppS cdsA dxr pgsA
plsY desE desK desR
ugtP birA gpsA fni
nudF cypC glpQA glpT
glpQ dxs ispA yqhY
accC accB ispG ispH
cesB pssA psd cypB
bscR etfA etfB fadB
fadR lcfA accA accD
estA acsA acuA acuC
fadE fadA fadN putM
pnbA cotR fakBA gtaB
fabZ clsA acdA fadF
clsB clsC scoB scoA
ycsD lipC acpS cesA
ispE pcrB cypD
SW 2.4.1 Utilization of lipids
estB glpP glpD yhdW
lcfB fadH ykuG glpQA
glpT glpQ cesB etfA
etfB fadB fadR lcfA
estA acsA acuA acuC
fadE fadA fadN putM
pnbA cotR acdA fadF
scoB scoA lipC cesA
SW 2.4.1.1 Utilization of phospholipids
glpP glpD glpQA glpT
cotR lipC
SW 2.4.1.2 Utilization of phospholipids/ based on similarity
yhdW glpQ
SW 2.4.1.3 Utilization of fatty acids
lcfB fadH ykuG etfA
etfB fadB fadR lcfA
acsA acuA acuC fadE
fadA fadN putM acdA
fadF scoB scoA
SW 2.4.1.4 Utilization of lipids/ other
estB cesB estA pnbA
cesA
SW 2.4.2 Biosynthesis of lipids
mprF fabL akrN plsC
fabHB phoE farP ispD
fakBB ispF fabHA fabF
fabI yloV fapR plsX
fabD fabG acpA uppS
cdsA dxr pgsA plsY
birA gpsA fni nudF
dxs ispA yqhY accC
accB ispG ispH pssA
psd accA accD fakBA
fabZ clsA clsB clsC
ycsD acpS ispE
SW 2.4.2.1 Biosynthesis of fatty acids
fabL akrN plsC fabHB
fabHA fabF fabI fapR
plsX fabD fabG acpA
birA yqhY accC accB
accA accD fabZ ycsD
acpS
SW 2.4.2.2 Biosynthesis of phospholipids
mprF fakBB yloV cdsA
pgsA plsY gpsA pssA
psd fakBA clsA clsB
clsC
SW 2.4.2.3 Biosynthesis of isoprenoids
phoE farP ispD ispF
uppS dxr fni nudF
dxs ispA ispG ispH
ispE
SW 2.4.3 Lipid metabolism/ other
pgcA cypE desE desK
desR ugtP cypC cypB
bscR gtaB pcrB cypD
SW 2.5 Nucleotide metabolism
yhcA dgcK mncR radA
disA relP purU guaN
dgcW adeC guaB adk
pyrR pyrP pyrB pyrC
pyrAA pyrAB pyrK pyrD
pyrF pyrE gmk pyrH
nrdI nrdE nrdF dutA
thyA cdaS deoD dutB
nrdEB nrdEB cdaA cdaR
thyB hdhQ pbuX xpt
ndk cmk dck pupG
deoB dgk purT cdd
pgpH nucB udk rsh
apt dgcP pbuO nupN
nupO nupP nupQ pdeH
guaC yutK pucH pucR
pucJ pucK pucL pucM
pucE pucD pucC pucB
pucA pucG pucF rnr
pucI upp tdk pyrG
relQ yxlA nupG pdp
nupC deoC deoR purA
gdpP ycnB tmk purR
pbuE prs guaA pbuG
purE purK purB purC
purS purQ purL purF
purM purN purH purD
hprT yfkN
SW 2.5.1 Utilization of nucleotides
adeC deoB nucB pucH
pucR pucJ pucK pucL
pucM pucE pucD pucC
pucB pucA pucG pucF
pucI pdp nupC deoC
deoR
SW 2.5.2 Biosynthesis/ acquisition of nucleotides
mncR purU guaN guaB
adk pyrR pyrP pyrB
pyrC pyrAA pyrAB pyrK
pyrD pyrF pyrE gmk
pyrH nrdI nrdE nrdF
thyA deoD nrdEB nrdEB
thyB pbuX xpt cmk
dck pupG dgk purT
udk apt pbuO nupN
nupO nupP nupQ guaC
yutK rnr upp tdk
pyrG yxlA nupG purA
tmk purR prs guaA
pbuG purE purK purB
purC purS purQ purL
purF purM purN purH
purD hprT
SW 2.5.2.1 Biosynthesis/ acquisition of purine nucleotides
purU guaB adk gmk
pbuX purT nupN nupO
nupP nupQ nupG purA
purR prs guaA pbuG
purE purK purB purC
purS purQ purL purF
purM purN purH purD
SW 2.5.2.2 Biosynthesis/ acquisition of purine nucleotides/ based on similarity
pbuO
SW 2.5.2.3 Purine salvage and interconversion
guaN deoD xpt dck
pupG dgk apt guaC
hprT
SW 2.5.2.4 Biosynthesis/ acquisition of pyrimidine nucleotides
pyrR pyrP pyrB pyrC
pyrAA pyrAB pyrK pyrD
pyrF pyrE pyrH thyA
thyB cmk udk upp
tdk pyrG tmk prs
SW 2.5.2.5 Biosynthesis/ acquisition of nucleotides/ other
mncR nrdI nrdE nrdF
nrdEB nrdEB rnr
SW 2.5.2.6 Biosynthesis/ acquisition of nucleotides/ other/ based on similarity
yutK yxlA
SW 2.5.3 Metabolism of signalling nucleotides
yhcA dgcK radA disA
relP dgcW cdaS cdaA
cdaR pgpH rsh dgcP
pdeH relQ gdpP ycnB
yfkN
SW 2.5.4 Nucleotide metabolism/ other
dutA dutB hdhQ ndk
cdd pbuE
SW 2.6 Additional metabolic pathways
pabB pabA sxzY sxzZ
sxzA pabC folP csbB
yfhO folB gsaB folK
thiC ssuB ssuA ssuC
ssuD pgcA phoA dat
hemZ hmoB hemE hemH
hemY lplJ yhfQ bioY
ntdC ntdB ntdA ntdR
yisZ yitA yitB ribZC
yitW ppnKA tenA tenI
thiO thiS thiG thiF
thiD ctaO pitB thiX
thiW thiV thiU pfeT
dapX ltdD dapH dapI
mobA moeB moeA mobB
moaE moaD defB speA
ctaA ctaB panE bshC
murE mraY murD spoVE
murG murB thiQ ylmD
cysH cysP sat cysC
sumT sirB sirC coaBC
thiN uppS ribC spoVFA
spoVFB asd dapG dapA
bcbE pksB pksC pksD
pksE acpK pksF pksG
pksH pksI pksJ pksL
pksM pksN pksR pksS
pdxS ppsE ppsD ppsC
ppsB ppsA eesA feuC
feuB feuA btr bshBB
pdxT ldcB phyC glmM
glmS sunS sunT sunA
dfrA S834 bpsB bpsA
panD panC panB birA
bshA bshBA dapB hepT
menG hepS folEA fmnP
ribH ribBA ribE ribD
fur coaA dxs lipM
ltaSC pstBB pstBA pstA
pstC pstS unpK yqeW
hemN nadD bltR blt
bltD murI cymR spoVB
nadA nadC nadB nifS
niaR folC hemL hemB
hemD hemC hemX hemA
rcmE phoD tatAD tatCD
speD coaE phoR phoP
sndA ribR cmoJ cmoI
cmoO snaA ascR moaB
ppnKB murC ytpQ murJ
bioI bioB bioD bioFC
bioK bioW ytoA dps
menC menE menB menH
menD menF glgP glgA
glgD glgC glgB thiT
gbsB gbsA gbsR pncB
niaP pncA dhbF dhbB
dhbE dhbC dhbA besA
paiA sufA dapF lipA
bsnA sufB sufU sufS
sufD sufC gcvH feuV
mrgA yvqK yvrA yvrB
yvrC fhuC fhuG fhuB
fhuD ltaSP nadE cysI
cysJ mgfK cypX pchC
tagO tuaH folEB tuaG
tuaF tuaE tuaD tuaC
tuaB tuaAc tuaAn yciB
mnaA gtaB ggaB ggaA
tagH tagG tagF tagE
tagD tagA tagB tagC
ribZB bcrC moaA murAA
srfAA murAB srfAB srfAC
sboA sboX albA albB
albC albD albE albF
albG srfAD speB speE
lipL cysL hemQ bacG
bacF bacE bacD bacC
bacB bacA spsL spsK
spsJ spsI sfpAc sfpAn
pdxK ywcD efeB efeM
efeU thiE thiM menA
dltA dltB dltC dltD
dltE sndB yxeO yxeN
yxeM snaB yxeK frxB
pbtN walJ pbtO pbtP
pbtQ ppaC ribZ amj
fbpB ddlA murF alrA
phoB fra thiL glmU
moaC yabM sapB dagK
hmoA ltaSA mtrA fecF
fecE fecD fecC nosA
ltaSB coaX
SW 2.6.1 Biosynthesis of cell wall components
csbB yfhO pgcA dat
dapX ltdD dapH dapI
murE mraY murD spoVE
murG murB ylmD uppS
asd dapG dapA ldcB
glmM glmS dapB ltaSC
unpK murI spoVB rcmE
murC murJ dapF ltaSP
mgfK tagO tuaH tuaG
tuaF tuaE tuaD tuaC
tuaB tuaAc tuaAn yciB
mnaA gtaB ggaB ggaA
tagH tagG tagF tagE
tagD tagA tagB tagC
bcrC murAA murAB ywcD
dltA dltB dltC dltD
dltE walJ amj ddlA
murF alrA glmU yabM
dagK ltaSA ltaSB
SW 2.6.1.1 Biosynthesis of peptidoglycan
dat dapX ltdD dapH
dapI murE mraY murD
spoVE murG murB ylmD
asd dapG dapA ldcB
glmM glmS dapB murI
spoVB rcmE murC murJ
dapF mgfK yciB murAA
murAB walJ amj ddlA
murF alrA glmU yabM
SW 2.6.1.2 Biosynthesis of lipoteichoic acid
csbB yfhO ltaSC unpK
ltaSP dagK ltaSA ltaSB
SW 2.6.1.3 Biosynthesis of teichoic acid
pgcA tagO mnaA gtaB
ggaB ggaA tagH tagG
tagF tagE tagD tagA
tagB tagC ywcD dltA
dltB dltC dltD dltE
SW 2.6.1.4 Biosynthesis of teichuronic acid
tuaH tuaG tuaF tuaE
tuaD tuaC tuaB tuaAc
tuaAn
SW 2.6.1.5 Biosynthesis of the carrier lipid undecaprenylphosphate
uppS bcrC
SW 2.6.2 Biosynthesis of cofactors
pabB pabA pabC folP
folB gsaB folK thiC
hemZ hemE hemH hemY
lplJ bioY ribZC ppnKA
tenA tenI thiO thiS
thiG thiF thiD ctaO
thiX thiW thiV thiU
mobA moeB moeA mobB
moaE moaD ctaA ctaB
panE thiQ sumT sirB
sirC coaBC thiN ribC
pdxS pdxT dfrA panD
panC panB birA hepT
menG hepS folEA fmnP
ribH ribBA ribE ribD
coaA dxs lipM hemN
nadD nadA nadC nadB
nifS niaR folC hemL
hemB hemD hemC hemX
hemA coaE moaB ppnKB
bioI bioB bioD bioFC
bioK bioW menC menE
menB menH menD menF
thiT pncB niaP pncA
lipA gcvH yvqK yvrA
yvrB yvrC nadE folEB
ribZB moaA lipL hemQ
pdxK thiE thiM menA
ribZ thiL moaC coaX
SW 2.6.2.1 Biosynthesis/ acquisition of biotin
bioY birA bioI bioB
bioD bioFC bioK bioW
SW 2.6.2.10 Biosynthesis of molybdopterin
mobA moeB moeA mobB
moaE moaD moaB moaA
moaC
SW 2.6.2.11 Biosynthesis of NAD(P)
ppnKA nadD nadA nadC
nadB nifS niaR ppnKB
pncB niaP pncA nadE
SW 2.6.2.12 Biosynthesis of pyridoxal phosphate
pdxS pdxT pdxK
SW 2.6.2.13 Biosynthesis/ acquisition of cobalamine (B12))
yvqK yvrA yvrB yvrC
SW 2.6.2.2 Biosynthesis/ acquisition of riboflavin/ FAD
ribZC ribC fmnP ribH
ribBA ribE ribD ribZB
ribZ
SW 2.6.2.3 Biosynthesis/ acquisition of thiamine
thiC tenA tenI thiO
thiS thiG thiF thiD
thiX thiW thiV thiU
thiQ thiN dxs thiT
thiE thiM thiL
SW 2.6.2.4 Biosynthesis of coenzyme A
panE coaBC panD panC
panB coaA coaE coaX
SW 2.6.2.5 Biosynthesis of folate
pabB pabA pabC folP
folB folK dfrA folEA
folC folEB
SW 2.6.2.6 Biosynthesis of heme/ siroheme
gsaB hemZ hemE hemH
hemY ctaO ctaA ctaB
sumT sirB sirC hemN
hemL hemB hemD hemC
hemX hemA hemQ
SW 2.6.2.7 Biosynthesis and scavenging of lipoic acid
lplJ lipM lipA gcvH
lipL
SW 2.6.2.8 Biosynthesis of menaquinone
hepT menG hepS menC
menE menB menD menF
menA
SW 2.6.2.9 Biosynthesis of menaquinone/ based on similarity
menH
SW 2.6.3 Phosphate metabolism
phoA pitB phyC pstBB
pstBA pstA pstC pstS
yqeW phoD tatAD tatCD
phoR phoP bsnA ppaC
phoB sapB
SW 2.6.4 Sulfur metabolism
ssuB ssuA ssuC ssuD
yisZ yitA yitB defB
cysH cysP sat cysC
cymR sndA ribR cmoJ
cmoI cmoO snaA ascR
cysI cysJ cysL sndB
yxeO yxeN yxeM snaB
yxeK mtrA
SW 2.6.4.1 Conversion of S-methyl cysteine to cysteine
defB sndA ribR cmoJ
cmoI cmoO snaA ascR
SW 2.6.4.2 sulfur metabolism/ general
ssuB ssuA ssuC ssuD
yisZ yitA yitB cysH
cysP sat cysC cymR
cysI cysJ cysL mtrA
SW 2.6.4.3 Conversion of S-(2-succino)cysteine to cysteine
sndB yxeO yxeN yxeM
snaB yxeK
SW 2.6.5 Iron metabolism
sxzY sxzZ sxzA hmoB
yhfQ yitW pfeT bcbE
eesA feuC feuB feuA
btr S834 fur ytpQ
ytoA dps dhbF dhbB
dhbE dhbC dhbA besA
sufA sufB sufU sufS
sufD sufC feuV mrgA
fhuC fhuG fhuB fhuD
cypX pchC efeB efeM
efeU frxB pbtN pbtO
pbtP pbtQ fbpB fra
hmoA fecF fecE fecD
fecC
SW 2.6.5.1 Acquisition of iron / Other
hmoB yhfQ bcbE eesA
btr S834 fur ytpQ
dps dhbF dhbB dhbE
dhbC dhbA besA mrgA
cypX pchC pchR fbpB
hmoA
SW 2.6.5.2 Acquisition of iron/ based on similarity
ytoA
SW 2.6.5.3 Biosynthesis of iron-sulfur clusters
yitW sufA sufB sufU
sufS sufD sufC fra
SW 2.6.5.4 ABC transporters for the uptake of iron/ siderophores
sxzY sxzZ sxzA yhfQ
feuC feuB feuA feuV
fhuC fhuG fhuB fhuD
frxB pbtN pbtO pbtP
pbtQ fecF fecE fecD
fecC
SW 2.6.5.5 Elemental iron transport system
efeB efeM efeU
SW 2.6.5.6 Iron export
pfeT
SW 2.6.6 Miscellaneous metabolic pathways
ntdC ntdB ntdA ntdR
speA bshC spoVFA spoVFB
pksB pksC pksD pksE
acpK pksF pksG pksH
pksI pksJ pksL pksM
pksN pksR pksS ppsE
ppsD ppsC ppsB ppsA
bshBB sunS sunT sunA
bpsB bpsA bshA bshBA
bltR blt bltD speD
glgP glgA glgD glgC
glgB gbsB gbsA gbsR
paiA srfAA srfAB srfAC
sboA sboX albA albB
albC albD albE albF
albG srfAD speB speE
bacG bacF bacE bacD
bacC bacB bacA spsL
spsK spsJ spsI sfpAc
sfpAn nosA
SW 2.6.6.1 Biosynthesis of antibacterial compounds
ntdC ntdB ntdA ntdR
pksB pksC pksD pksE
acpK pksF pksG pksH
pksI pksJ pksL pksM
pksN pksR pksS ppsE
ppsD ppsC ppsB ppsA
sunS sunT sunA bpsB
bpsA srfAA srfAB srfAC
sboA sboX albA albB
albC albD albE albF
albG srfAD bacG bacF
bacE bacD bacC bacB
bacA sfpAc sfpAn nosA
SW 2.6.6.2 Biosynthesis of bacillithiol
bshC bshBB bshA bshBA
SW 2.6.6.3 Biosynthesis of dipicolinate
spoVFA spoVFB
SW 2.6.6.4 Biosynthesis of glycine betaine
gbsB gbsA gbsR
SW 2.6.6.5 Biosynthesis of glycogen
glgP glgA glgD glgC
glgB
SW 2.6.6.6 Metabolism of polyamines
speA bltR blt bltD
speD paiA speB speE
SW 2.6.6.7 Biosynthesis of rhamnose (for the exosporium)
spsL spsK spsJ spsI
SW 2.7 Detoxification reactions
rsgA pncB sndB snaB
yxeK pxpA pxpB pxpC
ridA yflK catD catE
SW 3 Information processing
gyrA linK padR yfiR
yfiV yfhF recX mutY
gsaB perR SSU-rRNA-bacteria_rrnD-16S LSU-rRNA-archaea_rrnD-23S
5S-rRNA_rrnD-5S asnTA trnD-Ser trnD-Glu
trnD-Val trnD-Met trnD-Asp trnD-Phe
trnD-Thr trnD-Tyr yazB trnD-Trp
trnD-His trnD-Gln glyTB cysTA
leuTA leuTB dusB senS
rpsNB ygzD trnSL-Gly1 queG
trmL lysS prkA yhbI
SSU-rRNA-bacteria_rrnJ-16S yhcF cspB LSU-rRNA-archaea_rrnJ-23S
mncR srtA yhcT 5S-rRNA_rrnJ-5S
glpP trnJ-Val yhcY yhcZ
nsrR trnJ-Thr citR trnJ-Lys
yhdI asiMB asiMA sigM
cueR trnJ-Leu1 srtN trnJ-Gly
bmrB trnJ-Leu2 yhaZ khtT
trnJ-Arg yhaO sbcE yhaM
prsA SSU-rRNA-bacteria_rrnO-16S trnJ-Pro scoC
trnJ-Ala hinT ecsA ecsB
SSU-rRNA-bacteria_rrnW-16S yhgD LSU-rRNA-archaea_rrnW-23S aprE
5S-rRNA_rrnW-5S ctsR comK sipV
mcsA yhjH ntdR mcsB
addB addA sbcD sbcC
hlpB clpC pchI wprA
radA farP yisR iolQ
yisT yisV trnO-Ile yizB
nprB ipi gltX med
comZ trpS cysE oppA
oppB oppC oppD oppF
spxA cysS mecA coiA
pepF spxH mrnC yjbO
prpE kefQ rlmB trnO-Ala
raeA yjcD sigH yjcK
trnSL-Val2 rpmGB secE manR
manP trnE nusG rplK
yjhB rplA yjlC ndh
exuR rapA rplJ phrA
xre rplL xpf xtmA
xtmB LSU-rRNA-archaea_rrnO-23S rpoB rpoC
rulS ykcB htrA rpsL
rpsG fusA ohrR ispA
rsbRB tufA ykoG ykoH
mgtE tnrA ykoM ligD
ligV sigI rsgI 5S-rRNA_rrnO-5S
rpsJ htpK htpX kinE
ogt rplC rplD spo0E
kinD mhqR motB clpE
queC rplW queD queE
queF ykvN rplB rpsS
ykvZ glcT ptsG ptsH
ptsI splA splB rplV
kinA cheV kre rpsC
ykuI rplP abbA ykuL
ccpC rpmC rok rpsQ
fruR rplNA sipT abhA
kinC rplX ktrC rnjA
rnpZA rplE pdhB pdhC
rpsNA nprE sigP sigQ
rpsH bipA rplF ctaG
rplR ricF rsmD rpsE
ylbL ylbM rpmF gerR
rpmD guaB rplO bpr
secY spoIIGA sigE sigG
ileS lspA rluD mapA
pyrR pyrF infA fbnA
remA gmk rpoZ priA
defA rpmJ fmt rsmB
rlmN prpC prkC rsgA
rpmB rpsM recG fapR
rpsK rnc smc ftsY
ylqB ylxM ffh rpsP
rimM rpoA trmD rplS
rbgA rnhB dprA rplQ
topA trmFO codV clpQ
clpY codY fliY cheY
fliZ fliP fliQ fliR
flhB flhA cheA cheC
cheD sigD swrB rpsB
truA tsf frr rasP
proS polC rimP nusA
rulQ infB rbfA truB
rpsO pnpA mlpA rplM
rnjB tepA tepJ spoIIIE
ymfC rpsI efpI recA
rny miaB ricA mutS
mutL pksA salA miaA
hfq kbaA hflX ynbB
glnR glnA ynaD SSU-rRNA-bacteria_rrnI-16S
xylR LSU-rRNA-archaea_rrnI-23S 5S-rRNA_rrnI-5S tatAC
trnI-Asn pdxS trnI-Thr lexA
dinL pcfA spo0D trnI-Gly
yneI citB trnI-Arg parE
parC trnI-Pro trnI-Ala nrnB
SSU-rRNA-bacteria_rrnH-16S LSU-rRNA-archaea_rrnH-23S trnSL-Arg1 ftsR
5S-rRNA_rrnH-5S gltC rtp SSU-rRNA-bacteria_rrnG-16S
LSU-rRNA-archaea_rrnG-23S 5S-rRNA_rrnG-5S yozG yoaU
yobD yobE rapK phrK
yobHc yobHm yozL csaA
yobQ yobS czrA desK
desR recQ btr bsrB_6S_ssrSA
rsbRC pdxT arxR ctpA
murR sprB yotL trnSL-Glu2
trnSL-Val1 trnSL-Thr1 mtbP yorS
trnSL-Tyr1 dpoL yorK yorI
trnSL-Gln2 sigW yoqW yoqV
rsiW yopS yopO yonR
yonO hupN alkA serS
adaA adaB bdbB sunS
bdbA uvrX yolD sprA
ypoP silP ybzH cspD
degR ypeP ypdQ exnP
trnSL-Ser1 ypwA kdgR ypvA
rlmKB rnpB_RNaseP-bact-b_rnpB yprB yprA
recU nth dnaD asnS
dinG birA cca cheR
mtrB hbs gpsA der
ybdJ rpfA dgrA prsW
gudB ybdK mecB recS
rsiX sigX resE resD
ybdM rluB ypuI spcB
scpA sipS ppiB sigF
spoIIAB spoIIAA ripX fur
ansR yqxK yqjX polYB
S903 rnz polYA mifM
oxaAB bmrR bkdR spo0A
spoIVB recN argR yqxC
xseB xseA folD nusB
spoIIIAH spoIIIAG spoIIIAF spoIIIAE
spoIIIAD spoIIIAC spoIIIAB spoIIIAA
efp mntR yqhH sinI
sinR sipW comGG comGF
comGE comGD comGC comGB
comGA rsbRD trnSL-Gln1 mgsR
glpG rpmGA zur ybfI
nfo cshB trmK sigA
dnaG ppsR ccpN glyS
glyQ recO mpr era
rnrY pgpH rpsU mtaB
rsmE prmA dnaJ dnaK
grpE hrcA gpr rpsT
holA comEC comEB comEA
comER rsfS yqeI rgpH
sda sigKn spoIVCA arsR
rapE phrE ybfP yqaG
yqaF sknR gamR sigKc
yrkQ yrkP tadA bltR
czcR gltR azlB sigZ
yraN glnJ adhR sufL
glnL levE levR sigV
rsiV bscR scr_Bacteria-large-SRP_scr greA
yrrM rimF alaS garR
recDB mnmA iscSA cymR
rarA tcdA bsrA_6S_ssrSB aspS
hisS dtd recJ secDF
comN tgt queA ruvB
ruvA bofC rtpA niaR
thrR obgE spo0B rpmA
rppA rplU spoIVFB spoIVFA
ycbL ysxA maf comC
valS dnaX ycbM engB
lonA lonB clpX tig
trnSL-Arg2 rph ysmB gerE
uvrC fadR mutSB polX
rnhC pheT pheS rlmBB
ysfB ysdB rplT rpmI
infC tatAD lytT lytS
thrS dnaI dnaB tatCD
nrdR ytcD mutM polA
pcp phoR phoP pfkA
dnaEC nrnA ytoI lmrA
ascR ytxK sppA trmG
iscSB rpsD tyrS acuA
acuC ccpA natK sftA
ytpR recR natR trmB
ytzE rsuA rmgR msmR
leuS blrA bceS bceR
ytrA rppG luxS rpmEB
rapJ trnB-Glu trnB-Ser2 trnB-Asn
trnB-Ile2 trnB-Gly2 trnB-His trnB-Phe
trnB-Asp trnB-Met2 trnB-Ser1 trnB-Met3
trnB-Met1 trnB-Ala trnB-Pro trnB-Arg
trnB-Leu2 trnB-Gly1 trnB-Leu1 trnB-Lys
trnB-Thr trnB-Val 5S-rRNA_rrnB-5S LSU-rRNA-eukarya_rrnB-23S
SSU-rRNA-bacteria_rrnB-16S gbsR bslA ydaO-yuaA_swdA
ktrA trnSL-Ala1 rhaR mstX
pgi yugG kinB kapB
kapD bofA maeL maeM
comA comP comX comQ
degQ yueC yueB yukAB
yukC yukD adeR yceK
paiB lipA SSU-rRNA-bacteria_rrnA-16S pucR
bsnA frlR yuzN mdtR
yusT ycgE htrB cssR
cssS spxO liaR liaS
liaF yvrG yvrH rsoA
sigO trnA-Ile rsiO helD
bdbC bdbD csoR yvaF
ssrA_tmRNA_ssrA smpB rnr secG
yvzC rghRA rghRB catR
yvaV sdpR opuCA opcR
ycgK tpiA pgk cggR
araR yvbU yvfU yvfT
rsbQ rsbP ganR lutR
dnaA trnA-Ala sigL epsB
epsA slrR yvdT psmA
psmB trnQ-Arg clpP putR
mdxR psdS psdR crh
whiA yvcJ yvcI hisZ
lgt hprK nagR LSU-rRNA-archaea_rrnA-23S
uvrA uvrB yvkB swrAAc
swrAAn ctpB ftsX ftsE
prfB secA hag csrA
flgM comFC comFB comFA
degU degS zinU rbsR
alsR chrS ywqM nfi
ptpZ ptkA tkmA hepA
glcR ssbB ywpD rapD
spoIIID ywoH nin glnK
nucA mta rapB 5S-rRNA_rrnA-5S
hxlR glyA ywlG rpiB
prpB tsaC spoIIR prmC
prfA rpmEA rho spo0F
rpoE uvsE comS arfM
fnr argS rapF phrF
ywhA thrZ psrF cysL
csfB ycxD rocG bslB
ung ywzG sacP sacT
vpr slrC slrA cidR
rlmI epr sacX sacY
tyrZR bsdA tyrZ licB
licR aag yxlD yxlC
sigY yxjO yxjM yxjL
rlmA licT deaD bglP
hutP deoR tpeK tpeJ
yclJ iolR yclK htpG
yxbF rapC phrC qdoR
yxaD gntR yydK liaM
liaL liaK liaE liaD
rlmH rapG phrG rocR
htrC walJ walI walH
walK walR trnY-Phe trnY-Asp
trnY-Glu trnY-Lys dnaC yaaO
rplI gdpP hypR ycnC
yybE yybA yyaN ccpB
exoA rpsR ssbA rpsF
yczG parB parA rsmG
trmF mnmE gabR oxaAA
rnpA rpmH cutR mtlA
darA sipU pxpB pxpC
dnaN pxpR mtlR holB
lrpC topB ricT epsK
ydaO-yuaA_swaO kimA nudT dnaH
dctS dctR fbpB cshA
rsmI ndoA rsbRA rsbS
rsbT abrB rsbU rsbV
rsbW sigB rsbX ydcH
tex trnS-Asn trnS-Ser trnS-Glu
trnS-Gln trnS-Lys trnS-Leu1 trnS-Leu2
metS immA immR rlbA
rapI phrI lrpA lrpB
cspC rnmV cdnL ydeC
ydeE ydeF rsmA ydeL
ydeP prtG ydeS aseR
ydfD ydfF ydfH ydfI
ydfL ydgC ydgE dinB
ydgG ydgJ ydhC recF
purR gmuR trnE-Arg spoVG
trnE-Gly SSU-rRNA-bacteria_rrnE-16S LSU-rRNA-archaea_rrnE-23S 5S-rRNA_rrnE-5S
trnE-Met trnE-Asp tsaE tsaB
rimI tsaD rex tatAY
tatCY groES groEL ctc
bsuMA bsuMB pth bsuRA
bsuRB bsuRC gutR fin
mfd spoVT purB yezC
yerC hslR pcrA ligA
gatC gatA gatB yerO
rlmCD yefB yefC yeeA
rapH phrH yezE yesM
yesN rhgR trnSL-Met1 trnSL-Glu1
yetI yetI flvL spoIIE
gyrB copP yfmL yfmK
prkT citS citT tilS
mapB hprT ftsH treR
yfkJ yfkA yfjP hslO
yfjO dusC yfjL acoR
yacD malR cysK yfiF
linJ
SW 3.1 Genetics
gyrA yfhF recX mutY
yhaZ yhaO sbcE hinT
comK addB addA sbcD
sbcC hlpB radA yisT
med comZ cysE oppA
oppB oppC oppD oppF
mecA coiA yjcD rplK
yjhB yjlC ndh xtmA
xtmB ykcB ligD ligV
ogt motB ptsI splA
splB kre rok pdhB
pdhC pyrF priA rsgA
recG smc rnhB dprA
topA codV polC pnpA
spoIIIE recA mutS mutL
pdxS lexA dinL pcfA
parE parC rtp rapK
phrK yobHc yobHm yozL
recQ pdxT sprB mtbP
yorS dpoL yorK yorI
yoqV hupN alkA adaA
adaB uvrX yolD sprA
ypdQ exnP ypvA yprB
yprA recU nth dnaD
dinG hbs gpsA recS
spcB scpA ripX yqxK
yqjX polYB polYA oxaAB
recN xseB xseA yqhH
comGG comGF comGE comGD
comGC comGB comGA nfo
dnaG recO holA comEC
comEB comEA comER spoIVCA
greA recDB rarA recJ
comN ruvB ruvA ysxA
maf comC dnaX uvrC
mutSB polX rnhC dnaI
dnaB mutM polA pfkA
dnaEC ytxK sftA recR
ytrA rppG pgi comA
comP comX comQ helD
bdbC bdbD tpiA pgk
dnaA whiA yvcJ yvcI
uvrA uvrB hag comFC
comFB comFA nfi hepA
ssbB rapD nin nucA
glyA rpiB tsaC prmC
uvsE comS rapF phrF
ung aag rapC phrC
walJ dnaC exoA ssbA
parB parA dnaN holB
lrpC topB nudT dnaH
dinB recF bsuMA bsuMB
bsuRA bsuRB bsuRC fin
mfd purB pcrA ligA
yefB yefC yeeA gyrB
yfjP
SW 3.1.1 DNA replication
xtmA xtmB priA rnhB
polC pcfA rtp yoqV
exnP dnaD dnaG holA
recDB dnaX rnhC dnaI
dnaB polA dnaEC dnaA
ssbB dnaC ssbA dnaN
holB topB dnaH ligA
SW 3.1.2 DNA replication/ based on similarity
dpoL yorI ypdQ
SW 3.1.3 DNA condensation/ segregation
gyrA smc topA codV
spoIIIE parE parC hbs
spcB scpA ripX sftA
whiA parB parA topB
gyrB
SW 3.1.4 DNA restriction/ modification
mtbP bsuMA bsuMB bsuRA
bsuRB bsuRC yeeA
SW 3.1.5 DNA repair/ recombination
recX mutY sbcE addB
addA sbcD sbcC hlpB
radA ligD ligV ogt
splA splB recG dprA
pnpA recA mutS mutL
lexA recQ sprB alkA
adaA adaB uvrX yolD
sprA exnP yprB yprA
recU nth dinG recS
yqjX polYB polYA recN
nfo recO spoIVCA recJ
ruvB ruvA ysxA uvrC
mutSB polX mutM polA
recR rppG helD uvrA
uvrB nfi ssbB uvsE
ung walJ exoA ssbA
dnaN lrpC nudT dinB
recF fin mfd pcrA
SW 3.1.5.1 Excision of prophages
sprB sprA spoIVCA
SW 3.1.5.2 A/P endonucleases
nth nfo exoA
SW 3.1.5.3 Spore-encoded non-homologous end joining system
ligD ligV
SW 3.1.5.4 Double strand breaks repair
recU ruvB ruvA
SW 3.1.5.5 Oxidized guanine (GO) DNA repair system
mutY mutM rppG
SW 3.1.5.6 Other proteins
recX sbcE addB addA
sbcD sbcC hlpB radA
ogt splA splB recG
dprA pnpA recA lexA
recQ alkA adaA adaB
uvrX yolD exnP yprB
yprA dinG yqjX polYB
polYA recN recO recJ
ysxA uvrC mutSB polX
polA recR helD uvrA
uvrB nfi ssbB uvsE
ung ssbA lrpC nudT
dinB recF fin mfd
pcrA
SW 3.1.5.7 Mismatch repair (MMR)
mutS mutL walJ dnaN
SW 3.1.6 DNA repair/ recombination/ based on similarity
yhaZ yhaO yjcD yjhB
dinL yobHc yobHm yozL
recQ yorK ypvA yqxK
rarA recJ yvcI aag
yefB yefC yfjP
SW 3.1.7 Genetic competence
comK addB addA sbcD
sbcC med comZ oppA
oppB oppC oppD oppF
mecA coiA motB kre
rok dprA pnpA recA
rapK phrK oxaAB comGG
comGF comGE comGD comGC
comGB comGA comEC comEB
comEA comER comN ysxA
maf comC comA comP
comX comQ bdbC bdbD
yvcJ hag comFC comFB
comFA ssbB rapD nin
nucA comS rapF phrF
rapC phrC
SW 3.1.8 Genetics/ other/ based on similarity
hinT yisT yorS hupN
xseB xseA yqhH ytxK
hepA
SW 3.1.9 Newly identified competence genes
yfhF cysE rplK yjlC
ndh ykcB ptsI pdhB
pdhC pyrF rsgA pdxS
pdxT gpsA yqhH greA
pfkA ytrA pgi tpiA
pgk glyA rpiB tsaC
prmC purB
SW 3.2 RNA synthesis and degradation
cspB mncR sigM yhaM
mrnC raeA sigH nusG
xpf rpoB rpoC sigI
rnjA rnpZA sigP sigE
sigG rpoZ rnc rimM
rpoA rnhB sigD nusA
pnpA rnjB rny hfq
nrnB sigW yonO cspD
ypeP ypdQ rnpB_RNaseP-bact-b_rnpB sigX
sigF rnz nusB cshB
sigA rnrY sigKn sigKc
sigZ sigV greA rimF
rph rnhC nrnA rppG
bsnA rsoA sigO rnr
sigL rho rpoE sigY
deaD rnpA fbpB cshA
ndoA sigB tex cspC
rnmV spoVG mfd yfmL
SW 3.2.1 Transcription
sigM sigH nusG xpf
rpoB rpoC sigI rnpZA
sigP sigE sigG rpoZ
rpoA sigD nusA sigW
yonO sigX sigF nusB
sigA sigKn sigKc sigZ
sigV greA rsoA sigO
sigL rho rpoE sigY
sigB mfd
SW 3.2.1.1 RNA polymerase
rpoB rpoC rnpZA rpoZ
rpoA rpoE
SW 3.2.1.2 Sigma factors
sigM sigH xpf sigI
sigP sigE sigG sigD
sigW sigX sigF sigA
sigKn sigKc sigZ sigV
rsoA sigO sigL sigY
sigB
SW 3.2.1.3 Transcription elongation/ termination
nusG nusA nusB greA
rho mfd
SW 3.2.1.4 Prophage/ phage transcription
yonO
SW 3.2.2 RNA chaperones
cspB hfq cspD fbpB
cspC spoVG
SW 3.2.3 DEAD-box RNA helicases
cshB deaD cshA yfmL
SW 3.2.4 RNases
mncR yhaM mrnC raeA
rnjA rnc rimM rnhB
pnpA rnjB rny nrnB
rnpB_RNaseP-bact-b_rnpB rnz rnrY rph
rnhC nrnA rppG bsnA
rnr rnpA ndoA rnmV
SW 3.2.4.1 Exoribonucleases
yhaM rnjA pnpA nrnB
rph nrnA rnr
SW 3.2.4.2 Endoribonucleases
mncR mrnC raeA rnc
rnhB rnjB rny rnz
rnrY rnhC bsnA rnpA
ndoA rnmV
SW 3.2.4.3 RNA pyrophosphohydrolase
rppG
SW 3.2.4.4 RNases/ Other
rimM rnpB_RNaseP-bact-b_rnpB
SW 3.2.5 RNase/ based on similarity
ypeP ypdQ rimF tex
SW 3.3 Protein synthesis, modification and degradation
gsaB SSU-rRNA-bacteria_rrnD-16S LSU-rRNA-archaea_rrnD-23S 5S-rRNA_rrnD-5S
asnTA trnD-Ser trnD-Glu trnD-Val
trnD-Met trnD-Asp trnD-Phe trnD-Thr
trnD-Tyr trnD-Trp trnD-His trnD-Gln
glyTB cysTA leuTA leuTB
dusB rpsNB trnSL-Gly1 queG
trmL lysS prkA SSU-rRNA-bacteria_rrnJ-16S
LSU-rRNA-archaea_rrnJ-23S srtA yhcT 5S-rRNA_rrnJ-5S
trnJ-Val yhcY trnJ-Thr trnJ-Lys
trnJ-Leu1 srtN trnJ-Gly trnJ-Leu2
trnJ-Arg prsA SSU-rRNA-bacteria_rrnO-16S trnJ-Pro
trnJ-Ala ecsA ecsB SSU-rRNA-bacteria_rrnW-16S
LSU-rRNA-archaea_rrnW-23S aprE 5S-rRNA_rrnW-5S ctsR
sipV mcsB clpC pchI
wprA trnO-Ile nprB ipi
gltX trpS cysS mecA
spxH mrnC yjbO prpE
rlmB trnO-Ala yjcK trnSL-Val2
rpmGB secE trnE rplK
rplA rapA rplJ rplL
LSU-rRNA-archaea_rrnO-23S rulS htrA rpsL
rpsG fusA ispA tufA
ykoH 5S-rRNA_rrnO-5S rpsJ htpX
kinE rplC rplD spo0E
kinD clpE queC rplW
queD queE queF rplB
rpsS rplV kinA rpsC
rplP rpmC rpsQ rplNA
sipT kinC rplX rplE
rpsNA nprE rpsH bipA
rplF ctaG rplR rsmD
rpsE ylbL ylbM rpmF
rpmD rplO bpr secY
spoIIGA ileS lspA rluD
mapA infA fbnA defA
rpmJ fmt rsmB rlmN
prpC prkC rsgA rpmB
rpsM rpsK rnc ftsY
ylxM ffh rpsP rimM
trmD rplS rbgA rplQ
trmFO clpQ clpY fliY
fliZ fliP fliQ fliR
flhB flhA cheA cheC
cheD rpsB truA tsf
frr rasP proS rimP
rulQ infB rbfA truB
rpsO mlpA rplM tepA
tepJ rpsI efpI miaB
miaA ynbB ynaD SSU-rRNA-bacteria_rrnI-16S
LSU-rRNA-archaea_rrnI-23S 5S-rRNA_rrnI-5S tatAC trnI-Asn
trnI-Thr trnI-Gly trnI-Arg trnI-Pro
trnI-Ala SSU-rRNA-bacteria_rrnH-16S LSU-rRNA-archaea_rrnH-23S trnSL-Arg1
5S-rRNA_rrnH-5S SSU-rRNA-bacteria_rrnG-16S LSU-rRNA-archaea_rrnG-23S 5S-rRNA_rrnG-5S
yobE rapK csaA desK
ctpA trnSL-Glu2 trnSL-Val1 trnSL-Thr1
trnSL-Tyr1 trnSL-Gln2 yoqW serS
bdbB sunS bdbA trnSL-Ser1
ypwA rlmKB rnpB_RNaseP-bact-b_rnpB asnS
cca cheR der rpfA
prsW ybdK mecB resE
ybdM rluB ypuI sipS
ppiB spoIIAB S903 rnz
mifM oxaAB yqxC folD
spoIIIAH spoIIIAG spoIIIAF spoIIIAE
spoIIIAD spoIIIAC spoIIIAB efp
sipW trnSL-Gln1 glpG rpmGA
cshB trmK glyS glyQ
mpr era rnrY rpsU
mtaB rsmE prmA dnaJ
dnaK grpE gpr rpsT
rsfS yqeI rgpH rapE
yrkQ tadA glnJ sufL
scr_Bacteria-large-SRP_scr yrrM rimF alaS
mnmA iscSA tcdA aspS
hisS dtd secDF tgt
queA obgE rpmA rppA
rplU spoIVFB comC valS
ycbM engB lonA lonB
clpX tig trnSL-Arg2 rph
pheT pheS rlmBB rplT
rpmI infC tatAD lytS
thrS tatCD pcp phoR
sppA trmG iscSB rpsD
tyrS acuA acuC natK
ytpR trmB rsuA leuS
bceS rpmEB rapJ trnB-Glu
trnB-Ser2 trnB-Asn trnB-Ile2 trnB-Gly2
trnB-His trnB-Phe trnB-Asp trnB-Met2
trnB-Ser1 trnB-Met3 trnB-Met1 trnB-Ala
trnB-Pro trnB-Arg trnB-Leu2 trnB-Gly1
trnB-Leu1 trnB-Lys trnB-Thr trnB-Val
5S-rRNA_rrnB-5S LSU-rRNA-eukarya_rrnB-23S SSU-rRNA-bacteria_rrnB-16S trnSL-Ala1
mstX kinB maeL comP
yueC yueB yukAB yukC
yukD SSU-rRNA-bacteria_rrnA-16S htrB cssS
spxO liaS yvrG trnA-Ile
bdbC bdbD ssrA_tmRNA_ssrA smpB
secG yvfT rsbP trnA-Ala
epsB epsA psmA psmB
trnQ-Arg clpP psdS hisZ
lgt hprK LSU-rRNA-archaea_rrnA-23S ctpB
prfB secA degS ptpZ
ptkA tkmA ywpD rapD
rapB 5S-rRNA_rrnA-5S ywlG prpB
tsaC prmC prfA rpmEA
argS rapF thrZ vpr
rlmI epr tyrZ yxjM
rlmA deaD tpeK yclK
htpG rapC liaK liaE
rlmH rapG htrC walK
trnY-Phe trnY-Asp trnY-Glu trnY-Lys
yaaO rplI rpsR rpsF
rsmG trmF mnmE oxaAA
rnpA rpmH sipU dctS
cshA rsmI rsbT rsbU
rsbW rsbX trnS-Asn trnS-Ser
trnS-Glu trnS-Gln trnS-Lys trnS-Leu1
trnS-Leu2 metS immA rlbA
rapI rnmV rsmA prtG
ydfH ydgE trnE-Arg trnE-Gly
SSU-rRNA-bacteria_rrnE-16S LSU-rRNA-archaea_rrnE-23S 5S-rRNA_rrnE-5S trnE-Met
trnE-Asp tsaE tsaB rimI
tsaD tatAY tatCY groES
groEL ctc pth hslR
gatC gatA gatB rlmCD
rapH yesM trnSL-Met1 trnSL-Glu1
spoIIE yfmL yfmK prkT
citS tilS mapB ftsH
yfkJ yfkA hslO yfjO
dusC yfjL yacD linJ
SW 3.3.1 Translation
gsaB SSU-rRNA-bacteria_rrnD-16S LSU-rRNA-archaea_rrnD-23S 5S-rRNA_rrnD-5S
asnTA trnD-Ser trnD-Glu trnD-Val
trnD-Met trnD-Asp trnD-Phe trnD-Thr
trnD-Tyr trnD-Trp trnD-His trnD-Gln
glyTB cysTA leuTA leuTB
dusB rpsNB trnSL-Gly1 queG
trmL lysS SSU-rRNA-bacteria_rrnJ-16S LSU-rRNA-archaea_rrnJ-23S
yhcT 5S-rRNA_rrnJ-5S trnJ-Val trnJ-Thr
trnJ-Lys trnJ-Leu1 trnJ-Gly trnJ-Leu2
trnJ-Arg SSU-rRNA-bacteria_rrnO-16S trnJ-Pro trnJ-Ala
SSU-rRNA-bacteria_rrnW-16S LSU-rRNA-archaea_rrnW-23S 5S-rRNA_rrnW-5S trnO-Ile
gltX trpS cysS mrnC
yjbO rlmB trnO-Ala yjcK
trnSL-Val2 rpmGB trnE rplK
rplA rplJ rplL LSU-rRNA-archaea_rrnO-23S
rulS rpsL rpsG fusA
tufA 5S-rRNA_rrnO-5S rpsJ rplC
rplD queC rplW queD
queE queF rplB rpsS
rplV rpsC rplP rpmC
rpsQ rplNA rplX rplE
rpsNA rpsH bipA rplF
rplR rsmD rpsE ylbM
rpmF rpmD rplO ileS
rluD mapA infA fbnA
defA rpmJ fmt rsmB
rlmN rsgA rpmB rpsM
rpsK rnc rpsP rimM
trmD rplS rbgA rplQ
trmFO rpsB truA tsf
frr proS rimP rulQ
infB rbfA truB rpsO
rplM rpsI efpI miaB
miaA ynbB ynaD SSU-rRNA-bacteria_rrnI-16S
LSU-rRNA-archaea_rrnI-23S 5S-rRNA_rrnI-5S trnI-Asn trnI-Thr
trnI-Gly trnI-Arg trnI-Pro trnI-Ala
SSU-rRNA-bacteria_rrnH-16S LSU-rRNA-archaea_rrnH-23S trnSL-Arg1 5S-rRNA_rrnH-5S
SSU-rRNA-bacteria_rrnG-16S LSU-rRNA-archaea_rrnG-23S 5S-rRNA_rrnG-5S trnSL-Glu2
trnSL-Val1 trnSL-Thr1 trnSL-Tyr1 trnSL-Gln2
serS trnSL-Ser1 rlmKB rnpB_RNaseP-bact-b_rnpB
asnS cca der rpfA
rluB ypuI S903 rnz
mifM yqxC folD efp
trnSL-Gln1 rpmGA cshB trmK
glyS glyQ era rnrY
rpsU mtaB rsmE prmA
rpsT rsfS yqeI rgpH
tadA yrrM rimF alaS
mnmA iscSA tcdA aspS
hisS dtd tgt queA
obgE rpmA rppA rplU
valS engB trnSL-Arg2 rph
pheT pheS rlmBB rplT
rpmI infC thrS trmG
iscSB rpsD tyrS ytpR
trmB rsuA leuS rpmEB
trnB-Glu trnB-Ser2 trnB-Asn trnB-Ile2
trnB-Gly2 trnB-His trnB-Phe trnB-Asp
trnB-Met2 trnB-Ser1 trnB-Met3 trnB-Met1
trnB-Ala trnB-Pro trnB-Arg trnB-Leu2
trnB-Gly1 trnB-Leu1 trnB-Lys trnB-Thr
trnB-Val 5S-rRNA_rrnB-5S LSU-rRNA-eukarya_rrnB-23S SSU-rRNA-bacteria_rrnB-16S
trnSL-Ala1 SSU-rRNA-bacteria_rrnA-16S trnA-Ile ssrA_tmRNA_ssrA
smpB trnA-Ala trnQ-Arg hisZ
LSU-rRNA-archaea_rrnA-23S prfB 5S-rRNA_rrnA-5S ywlG
tsaC prmC prfA rpmEA
argS thrZ rlmI tyrZ
rlmA deaD rlmH trnY-Phe
trnY-Asp trnY-Glu trnY-Lys yaaO
rplI rpsR rpsF rsmG
trmF mnmE rnpA rpmH
cshA rsmI trnS-Asn trnS-Ser
trnS-Glu trnS-Gln trnS-Lys trnS-Leu1
trnS-Leu2 metS rlbA rnmV
rsmA trnE-Arg trnE-Gly SSU-rRNA-bacteria_rrnE-16S
LSU-rRNA-archaea_rrnE-23S 5S-rRNA_rrnE-5S trnE-Met trnE-Asp
tsaE tsaB rimI tsaD
ctc pth hslR gatC
gatA gatB rlmCD trnSL-Met1
trnSL-Glu1 yfmL tilS mapB
yfkA yfjO dusC yfjL
SW 3.3.1.1 Ribosomal RNA
SSU-rRNA-bacteria_rrnD-16S LSU-rRNA-archaea_rrnD-23S 5S-rRNA_rrnD-5S SSU-rRNA-bacteria_rrnJ-16S
LSU-rRNA-archaea_rrnJ-23S 5S-rRNA_rrnJ-5S SSU-rRNA-bacteria_rrnO-16S SSU-rRNA-bacteria_rrnW-16S
LSU-rRNA-archaea_rrnW-23S 5S-rRNA_rrnW-5S LSU-rRNA-archaea_rrnO-23S 5S-rRNA_rrnO-5S
SSU-rRNA-bacteria_rrnI-16S LSU-rRNA-archaea_rrnI-23S 5S-rRNA_rrnI-5S SSU-rRNA-bacteria_rrnH-16S
LSU-rRNA-archaea_rrnH-23S 5S-rRNA_rrnH-5S SSU-rRNA-bacteria_rrnG-16S LSU-rRNA-archaea_rrnG-23S
5S-rRNA_rrnG-5S 5S-rRNA_rrnB-5S LSU-rRNA-eukarya_rrnB-23S SSU-rRNA-bacteria_rrnB-16S
SSU-rRNA-bacteria_rrnA-16S LSU-rRNA-archaea_rrnA-23S 5S-rRNA_rrnA-5S SSU-rRNA-bacteria_rrnE-16S
LSU-rRNA-archaea_rrnE-23S 5S-rRNA_rrnE-5S
SW 3.3.1.10 Aminoacyl-tRNA synthetases
lysS gltX trpS cysS
ileS proS serS asnS
glyS glyQ alaS aspS
hisS valS pheT pheS
thrS tyrS ytpR leuS
hisZ argS thrZ tyrZ
metS gatC gatA gatB
SW 3.3.1.11 Translation factors
fusA tufA bipA infA
tsf frr infB rbfA
efp infC prfB prfA
SW 3.3.1.12 Translation/ other
mapA fbnA defA mifM
prmA rsfS dtd ssrA_tmRNA_ssrA
smpB deaD pth mapB
SW 3.3.1.13 Translation/ other/ based on similarity
yjcK rimP ynaD yqeI
prmC rimI hslR
SW 3.3.1.14 Translation factor modification and maturation
gsaB efpI ynbB ywlG
yaaO yfkA
SW 3.3.1.2 rRNA modification and maturation
mrnC rlmB rnc rimM
rluB ypuI rnrY rsmE
rlmBB rsmG rnmV rsmA
rlmCD
SW 3.3.1.3 rRNA modification and maturation/ based on similarity
yhcT yjbO rsmD rluD
rsmB rlmN rlmKB yqxC
rimF rsuA rlmI rlmA
rlmH rsmI yfjO
SW 3.3.1.4 Ribosomal proteins
rpsNB rpmGB rplK rplA
rplJ rplL rulS rpsL
rpsG rpsJ rplC rplD
rplW rplB rpsS rplV
rpsC rplP rpmC rpsQ
rplNA rplX rplE rpsNA
rpsH rplF rplR rpsE
rpmF rpmD rplO rpmJ
rpmB rpsM rpsK rpsP
rplS rplQ rpsB rpsO
rplM rpsI S903 rpmGA
rpsU rpsT rpmA rplU
rplT rpmI rpsD rpmEB
rpmEA rplI rpsR rpsF
rpmH ctc
SW 3.3.1.5 Ribosomal protein/ based on similarity
rulQ rpfA yfjL
SW 3.3.1.6 Ribosome assembly
rsgA rbgA der cshB
era rgpH obgE rppA
engB cshA rlbA yfmL
SW 3.3.1.7 tRNA
asnTA trnD-Ser trnD-Glu trnD-Val
trnD-Met trnD-Asp trnD-Phe trnD-Thr
trnD-Tyr trnD-Trp trnD-His trnD-Gln
glyTB cysTA leuTA leuTB
trnSL-Gly1 trnJ-Val trnJ-Thr trnJ-Lys
trnJ-Leu1 trnJ-Gly trnJ-Leu2 trnJ-Arg
trnJ-Pro trnJ-Ala trnO-Ile trnO-Ala
trnSL-Val2 trnI-Asn trnI-Thr trnI-Gly
trnI-Arg trnI-Pro trnI-Ala trnSL-Arg1
trnSL-Glu2 trnSL-Val1 trnSL-Thr1 trnSL-Tyr1
trnSL-Gln2 trnSL-Ser1 trnSL-Gln1 trnSL-Arg2
trnB-Glu trnB-Ser2 trnB-Asn trnB-Ile2
trnB-Gly2 trnB-His trnB-Phe trnB-Asp
trnB-Met2 trnB-Ser1 trnB-Met3 trnB-Met1
trnB-Ala trnB-Pro trnB-Arg trnB-Leu2
trnB-Gly1 trnB-Leu1 trnB-Lys trnB-Thr
trnB-Val trnSL-Ala1 trnA-Ile trnA-Ala
trnQ-Arg trnY-Phe trnY-Asp trnY-Glu
trnY-Lys trnS-Asn trnS-Ser trnS-Glu
trnS-Gln trnS-Lys trnS-Leu1 trnS-Leu2
trnE-Arg trnE-Gly trnE-Met trnE-Asp
trnSL-Met1 trnSL-Glu1
SW 3.3.1.8 tRNA modification and maturation
dusB queG trmL queC
queD queE queF ylbM
fmt trmD trmFO truA
truB miaB miaA rnpB_RNaseP-bact-b_rnpB
cca rnz folD trmK
mtaB tadA yrrM mnmA
iscSA tcdA tgt queA
rph trmG iscSB trmB
tsaC trmF mnmE rnpA
tsaE tsaB tsaD tilS
dusC
SW 3.3.1.9 tRNA modification and maturation/ based on similarity
trnE
SW 3.3.2 Chaperones/ protein folding
bdbB bdbA ppiB dnaJ
dnaK grpE tig bdbC
bdbD htpG groES groEL
SW 3.3.3 Chaperone/ protein folding/ based on similarity
psmA psmB hslO
SW 3.3.4 Protein modification
gsaB prkA yhcY srtN
mcsB pchI prpE yjcK
rapA ykoH kinE spo0E
kinD kinA kinC ctaG
mapA defA prpC prkC
fliY cheA cheC cheD
efpI ynbB ynaD rapK
desK sunS cheR ybdK
resE ybdM spoIIAB prmA
rapE yrkQ glnJ ycbM
lytS pcp phoR acuA
acuC natK bceS rapJ
kinB maeL comP cssS
liaS yvrG yvfT rsbP
epsB epsA psdS lgt
hprK degS ptpZ ptkA
tkmA ywpD rapD rapB
ywlG prpB prmC rapF
yxjM tpeK yclK rapC
liaE rapG walK yaaO
dctS rsbT rsbU rsbW
rsbX rapI ydfH ydgE
tsaE rimI rapH yesM
spoIIE yfmK prkT citS
mapB yfkJ yfkA linJ
SW 3.3.4.1 Protein maturation
ctaG mapA defA lgt
mapB
SW 3.3.4.2 Protein kinases
prkA yhcY mcsB ykoH
kinE kinD kinA kinC
prkC cheA desK ybdK
resE ybdM spoIIAB yrkQ
glnJ ycbM lytS phoR
natK bceS kinB maeL
comP cssS liaS yvrG
yvfT epsB epsA psdS
hprK degS ptkA tkmA
ywpD yxjM tpeK yclK
walK dctS rsbT rsbW
ydfH tsaE yesM prkT
citS linJ
SW 3.3.4.4 Protein phosphatases
pchI prpE rapA spo0E
prpC fliY cheC rapK
rapE rapJ rsbP ptpZ
rapD rapB prpB rapF
rapC rapG rsbU rsbX
rapI rapH spoIIE yfkJ
SW 3.3.4.5 Protein acetylases/ deacetylases
srtN acuA acuC ydgE
yfmK
SW 3.3.4.6 Protein acetylase/ deacetylase/ based on similarity
yjcK ynaD rimI
SW 3.3.4.7 Protein deaminase
cheD
SW 3.3.4.8 Protein modification/ other
gsaB efpI ynbB sunS
cheR prmA pcp ywlG
prmC liaE yaaO yfkA
SW 3.3.5 Protein secretion
srtA prsA ecsA ecsB
sipV secE sipT secY
lspA rnc ftsY ylxM
ffh fliZ fliP fliQ
fliR flhB flhA tatAC
csaA sipS oxaAB spoIIIAH
spoIIIAG spoIIIAF spoIIIAE spoIIIAD
spoIIIAC spoIIIAB sipW scr_Bacteria-large-SRP_scr
secDF comC tatAD tatCD
sppA mstX yueC yueB
yukAB yukC yukD secG
secA oxaAA sipU tatAY
tatCY
SW 3.3.6 Protein secretion/ based on similarity
yobE yoqW yacD
SW 3.3.7 Proteolysis
aprE ctsR clpC wprA
nprB ipi mecA spxH
htrA ispA htpX clpE
nprE ylbL bpr spoIIGA
clpQ clpY rasP mlpA
tepA tepJ ctpA ypwA
prsW mecB glpG mpr
gpr sufL rppA spoIVFB
lonA lonB clpX htrB
spxO clpP ctpB vpr
epr liaK htrC immA
prtG ftsH
SW 3.3.7.1 Protein quality control
wprA htrA htrB htrC
SW 3.3.7.2 Extracellular feeding proteases
aprE nprB nprE bpr
mpr vpr epr
SW 3.3.7.3 Proteolysis during sporulation/ germination
spoIIGA tepA tepJ gpr
spoIVFB
SW 3.3.7.4 Additional proteins involved in proteolysis
ctsR clpC ipi mecA
spxH ispA htpX clpE
ylbL clpQ clpY rasP
mlpA ctpA ypwA prsW
mecB glpG sufL rppA
lonA lonB clpX spxO
clpP ctpB liaK immA
prtG ftsH
SW 3.4 Regulation of gene expression
linK padR yfiR yfiV
perR yazB senS ygzD
yhbI yhcF glpP yhcY
yhcZ nsrR citR yhdI
asiMB asiMA sigM cueR
bmrB scoC ecsA ecsB
yhgD ctsR comK mcsA
yhjH ntdR mcsB pchI
farP yisR iolQ yisV
yizB oppA oppB oppC
oppD oppF spxA pepF
sigH manR manP exuR
rapA phrA xre xpf
ohrR rsbRB ykoG ykoH
tnrA ykoM sigI rsgI
htpK kinE spo0E kinD
mhqR ykvN ykvZ glcT
ptsG ptsH splA kinA
cheV abbA ccpC rok
fruR abhA kinC sigP
sigQ ricF gerR spoIIGA
sigE sigG pyrR remA
fapR ylqB codY cheY
cheA sigD swrB rasP
ymfC ricA pksA salA
kbaA glnR glnA xylR
lexA spo0D yneI citB
ftsR gltC yozG yoaU
yobD rapK phrK yobQ
yobS czrA desK desR
btr bsrB_6S_ssrSA rsbRC arxR
murR yotL sigW rsiW
yopS yopO yonR adaA
ypoP silP ybzH degR
kdgR birA mtrB ybdJ
prsW gudB ybdK rsiX
sigX resE resD sigF
spoIIAB spoIIAA fur ansR
bmrR bkdR spo0A spoIVB
argR spoIIIAA mntR sinI
sinR rsbRD mgsR zur
ybfI sigA ppsR ccpN
hrcA sda sigKn spoIVCA
arsR rapE phrE ybfP
yqaG yqaF sknR gamR
sigKc yrkQ yrkP bltR
czcR gltR azlB sigZ
yraN glnJ adhR glnL
levE levR sigV rsiV
bscR garR cymR bsrA_6S_ssrSB
bofC rtpA niaR thrR
obgE spo0B spoIVFB spoIVFA
ycbL ycbM ysmB gerE
fadR ysfB ysdB rplT
lytT lytS nrdR ytcD
phoR phoP ytoI lmrA
ascR ccpA natK natR
ytzE rmgR msmR blrA
bceS bceR ytrA luxS
rapJ gbsR bslA rhaR
yugG kinB kapB kapD
bofA maeL maeM comA
comP comX comQ degQ
adeR yceK paiB lipA
pucR frlR yuzN mdtR
yusT ycgE cssR cssS
liaR liaS liaF yvrG
yvrH rsoA sigO rsiO
csoR yvaF yvzC rghRA
rghRB catR yvaV sdpR
opcR ycgK cggR araR
yvbU yvfU yvfT rsbQ
rsbP ganR lutR sigL
slrR yvdT putR mdxR
psdS psdR crh whiA
hprK nagR yvkB swrAAc
swrAAn ctpB ftsX ftsE
csrA flgM degU degS
rbsR alsR chrS ywqM
glcR ywpD rapD spoIIID
ywoH glnK mta rapB
hxlR spoIIR spo0F arfM
fnr rapF phrF ywhA
psrF cysL csfB ycxD
rocG bslB ywzG sacP
sacT slrC slrA cidR
sacX sacY tyrZR bsdA
licB licR yxlD yxlC
sigY yxjO yxjM yxjL
licT bglP hutP deoR
tpeK tpeJ yclJ iolR
yclK yxbF rapC phrC
qdoR yxaD gntR yydK
liaM liaL liaK liaE
liaD rapG phrG rocR
walI walH walK walR
hypR ycnC yybE yybA
yyaN ccpB yczG gabR
cutR mtlA pxpB pxpC
pxpR mtlR ricT dctS
dctR rsbRA rsbS rsbT
abrB rsbU rsbV rsbW
sigB rsbX ydcH immA
immR rapI phrI lrpA
lrpB cdnL ydeC ydeE
ydeF ydeL ydeP ydeS
aseR ydfD ydfF ydfH
ydfI ydfL ydgC ydgG
ydgJ ydhC purR gmuR
rex gutR fin spoVT
yezC yerC yerO rapH
phrH yezE yesM yesN
rhgR yetI yetI flvL
spoIIE copP citS citT
tilS hprT treR acoR
malR cysK yfiF linJ
SW 3.4.1 Sigma factors and their control
asiMB asiMA sigM ecsA
ecsB sigH xpf rsbRB
sigI rsgI sigP sigQ
spoIIGA sigE sigG sigD
swrB rasP bsrB_6S_ssrSA rsbRC
sigW rsiW prsW rsiX
sigX sigF spoIIAB spoIIAA
spoIVB spoIIIAA rsbRD sigA
sigKn spoIVCA sigKc sigZ
sigV rsiV bsrA_6S_ssrSB bofC
spoIVFB spoIVFA ysdB blrA
bofA rsoA sigO rsiO
rsbQ rsbP sigL ctpB
flgM spoIIR psrF csfB
yxlD yxlC sigY rsbRA
rsbS rsbT rsbU rsbV
rsbW sigB rsbX fin
yetI yetI spoIIE
SW 3.4.1.1 Sigma factors
sigM sigH xpf sigI
sigP sigE sigG sigD
sigW sigX sigF sigA
sigKn sigKc sigZ sigV
rsoA sigO sigL sigY
sigB
SW 3.4.1.2 Control of sigma factors
asiMB asiMA ecsA ecsB
rsbRB rsgI sigQ spoIIGA
swrB rasP bsrB_6S_ssrSA rsbRC
rsiW prsW rsiX spoIIAB
spoIIAA spoIVB spoIIIAA rsbRD
spoIVCA rsiV bsrA_6S_ssrSB bofC
spoIVFB spoIVFA ysdB blrA
bofA rsiO rsbQ rsbP
ctpB flgM spoIIR psrF
csfB yxlD yxlC rsbRA
rsbS rsbT rsbU rsbV
rsbW rsbX fin yetI
yetI spoIIE
SW 3.4.2 Transcription factors and their control
linK padR yfiR yfiV
perR yazB senS ygzD
yhbI yhcF glpP yhcY
yhcZ nsrR citR yhdI
cueR scoC yhgD ctsR
comK mcsA yhjH ntdR
mcsB yisR iolQ yisV
yizB spxA manR manP
exuR rapA phrA xre
ohrR ykoG ykoH tnrA
ykoM htpK kinE kinD
mhqR ykvN ykvZ glcT
ptsG ptsH splA kinA
cheV abbA ccpC rok
fruR kinC ricF gerR
pyrR remA fapR codY
cheY cheA ymfC ricA
pksA salA glnR glnA
xylR lexA yneI ftsR
gltC yozG yoaU yobD
rapK phrK yobQ yobS
czrA desK desR btr
arxR murR yotL yopS
yopO yonR adaA ypoP
silP ybzH degR kdgR
birA mtrB ybdJ gudB
ybdK resE resD fur
ansR bmrR bkdR spo0A
argR mntR sinI sinR
mgsR zur ybfI ppsR
ccpN hrcA arsR rapE
phrE ybfP yqaG yqaF
sknR gamR yrkQ yrkP
bltR czcR gltR azlB
yraN glnJ adhR glnL
levE levR bscR garR
cymR rtpA niaR thrR
ycbL ycbM ysmB gerE
fadR ysfB lytT lytS
nrdR ytcD phoR phoP
ytoI lmrA ascR ccpA
natK natR ytzE rmgR
msmR bceS bceR ytrA
rapJ gbsR rhaR yugG
kinB maeL maeM comA
comP degQ adeR yceK
paiB pucR frlR yuzN
mdtR yusT ycgE cssR
cssS liaR liaS liaF
yvrG yvrH csoR yvaF
yvzC rghRA rghRB catR
yvaV sdpR opcR ycgK
cggR araR yvbU yvfU
yvfT ganR lutR slrR
yvdT putR mdxR psdS
psdR crh whiA hprK
nagR yvkB swrAAc swrAAn
degU degS rbsR alsR
chrS ywqM glcR ywpD
rapD spoIIID ywoH glnK
mta rapB hxlR arfM
fnr rapF phrF ywhA
cysL ycxD rocG ywzG
sacP sacT slrC slrA
cidR sacX sacY tyrZR
bsdA licB licR yxjO
yxjM yxjL licT bglP
hutP deoR tpeK tpeJ
yclJ iolR yclK yxbF
rapC phrC qdoR yxaD
gntR yydK liaM liaL
liaK liaE liaD rapG
phrG rocR walI walH
walK walR hypR ycnC
yybE yybA yyaN ccpB
yczG gabR cutR mtlA
pxpR mtlR dctS dctR
ydcH immA immR rapI
phrI lrpA lrpB cdnL
ydeC ydeE ydeF ydeL
ydeP ydeS aseR ydfD
ydfF ydfH ydfI ydfL
ydgC ydgG ydgJ ydhC
purR gmuR rex gutR
spoVT yezC yerC yerO
rapH phrH yezE yesM
yesN rhgR flvL copP
citS citT tilS hprT
treR acoR malR cysK
yfiF linJ
SW 3.4.2.1 Two-component system response regulators
linK yhcZ ykoG cheY
yneI desR ybdJ resD
spo0A yrkP glnL ycbL
lytT phoP natR bceR
maeM comA cssR liaR
yvrH yvfU psdR degU
yxjL tpeJ yclJ walR
dctR ydfI yesN citT
SW 3.4.2.2 Control of two-component response regulators
yhcY rapA phrA ykoH
kinE kinD kinA cheV
kinC cheA rapK phrK
desK degR ybdK resE
rapE phrE yrkQ glnJ
ycbM lytS phoR natK
bceS rapJ kinB maeL
comP degQ cssS liaS
liaF yvrG yvfT psdS
swrAAc swrAAn degS ywpD
rapD rapB rapF phrF
yxjM tpeK yclK rapC
phrC liaM liaL liaK
liaE liaD rapG phrG
walI walH walK dctS
rapI ydfH rapH phrH
yesM citS linJ
SW 3.4.2.2.1 Two-component sensor kinase
yhcY ykoH kinE kinD
kinA kinC cheA desK
ybdK resE yrkQ glnJ
ycbM lytS phoR natK
bceS kinB maeL comP
cssS liaS yvrG yvfT
psdS degS ywpD yxjM
tpeK yclK walK dctS
ydfH yesM citS linJ
SW 3.4.2.2.2 Response regulator aspartate phosphatase
rapA rapK rapE rapJ
rapD rapB rapF rapC
rapG rapI rapH
SW 3.4.2.2.3 Control of response regulators/ other
phrA cheV phrK degR
phrE degQ liaF swrAAc
swrAAn phrF phrC liaM
liaL liaK liaE liaD
phrG walI walH phrH
SW 3.4.2.3 PRD-type regulators
manR glcT levR sacT
sacY licR licT mtlR
SW 3.4.2.4 Control of PRD-type regulators
manP ptsG levE sacP
sacX licB bglP mtlA
SW 3.4.2.5 Transcription factors/ other
padR perR senS glpP
nsrR citR cueR scoC
ctsR comK ntdR iolQ
spxA exuR xre ohrR
tnrA htpK mhqR splA
ccpC rok fruR gerR
pyrR remA fapR codY
pksA glnR xylR lexA
ftsR gltC czrA btr
arxR murR adaA silP
kdgR birA mtrB fur
ansR bmrR bkdR argR
mntR sinR mgsR zur
ccpN hrcA arsR sknR
gamR bltR gltR azlB
adhR bscR garR cymR
niaR thrR gerE fadR
nrdR lmrA ascR ccpA
msmR ytrA gbsR rhaR
yugG adeR paiB pucR
frlR mdtR csoR rghRA
catR sdpR opcR cggR
araR ganR lutR slrR
putR nagR rbsR alsR
chrS glcR spoIIID mta
hxlR arfM fnr cysL
slrC tyrZR bsdA hutP
deoR iolR qdoR gntR
rocR hypR ccpB gabR
cutR pxpR ydcH immR
lrpA lrpB aseR purR
gmuR rex gutR spoVT
rhgR flvL copP tilS
hprT treR acoR malR
SW 3.4.2.6 Transcription factor/ other/ based on similarity
yfiR yfiV yazB ygzD
yhbI yhcF yhdI yhgD
yhjH yisR yisV yizB
ykoM ykvN ykvZ ymfC
yozG yoaU yobD yobQ
yobS yotL yopS yopO
yonR ypoP ybzH ybfI
ybfP yqaG yqaF czcR
yraN ysmB ysfB ytcD
ytoI ytzE rmgR yceK
yuzN yusT ycgE yvaF
yvzC rghRB yvaV ycgK
yvbU yvdT mdxR whiA
yvkB ywqM ywoH ywhA
ycxD ywzG cidR yxjO
yxbF yxaD yydK ycnC
yybE yybA yyaN yczG
cdnL ydeC ydeE ydeF
ydeL ydeP ydeS ydfD
ydfF ydfL ydgC ydgG
ydgJ ydhC yezC yerC
yerO yezE yfiF
SW 3.4.2.7 Control of transcription factor (other than two-component system)
mcsA mcsB ptsH abbA
ricF ricA salA glnA
gudB sinI ppsR rtpA
crh hprK glnK rocG
slrA immA rapI phrI
tilS hprT cysK
SW 3.4.3 Trigger enzyme
manP ptsG glnA citB
adaA birA gudB levE
lipA rocG sacP sacX
licB bglP mtlA cysK
SW 3.4.3.1 Trigger enzymes of the PTS that control the activity of PRD-containing transcription factors
manP ptsG levE sacP
sacX licB bglP mtlA
SW 3.4.3.2 Trigger enzymes that control gene expression by protein-protein interaction with transcription factors
glnA gudB rocG cysK
SW 3.4.3.3 Trigger enzymes that act directly as transcription factors by binding DNA
adaA birA
SW 3.4.3.4 Trigger enzyme that acts by binding of a specific RNA element
citB
SW 3.4.3.5 Trigger enzymes that control transcription in a yet unknown way
lipA
SW 3.4.4 RNA binding regulators
glpP glcT pyrR citB
mtrB rplT csrA sacT
sacY licT hutP
SW 3.4.5 Regulators of core metabolism
tnrA ccpC codY ccpN
cymR phoP ccpA cggR
SW 3.4.6 Transition state regulators
scoC abhA salA sinI
sinR slrR slrA abrB
SW 3.4.7 phosphorelay
pchI farP oppA oppB
oppC oppD oppF pepF
rapA phrA kinE spo0E
kinD kinA kinC ricF
ylqB ricA kbaA spo0D
spo0A sda rapE phrE
obgE spo0B bslA kinB
kapB kapD rghRA ftsX
ftsE rapB spo0F bslB
pxpB pxpC pxpR ricT
lrpA lrpB rapH phrH
SW 3.4.7.1 The kinases
kinE kinD kinA kinC
kinB
SW 3.4.7.2 Proteins controlling the activity of the kinases
ylqB kbaA sda bslA
kapB bslB pxpB pxpC
SW 3.4.7.3 The phosphotransferases
spo0B spo0F
SW 3.4.7.4 The ultimate target
spo0A
SW 3.4.7.5 Phosphatases controlling the phosphorelay
pchI rapA spo0E spo0D
rapE rapB rapH
SW 3.4.7.6 Other protein controlling the activity of the phosphorelay
phrA ricF ricA phrE
ricT phrH
SW 3.4.8 Quorum sensing
rapA phrA rapK phrK
rapE phrE luxS comA
comP comX comQ rapD
rapF phrF rapC phrC
rapG phrG rapI phrI
rapH phrH
SW 3.4.9 Other regulators
bmrB
SW 3.5 Targets of second messengers
khtT kefQ mgtE ykuI
ykuL ktrC guaB gmk
rbgA infB hflX dgrA
dnaG era pgpH ydaO-yuaA_swdA
ktrA opuCA zinU gdpP
darA epsK ydaO-yuaA_swaO kimA
hprT
SW 3.5.1 Targets of c-di-AMP
khtT kefQ mgtE ykuL
ktrC ydaO-yuaA_swdA ktrA opuCA
darA ydaO-yuaA_swaO kimA
SW 3.5.2 Targets of c-di-GMP
ykuI dgrA epsK
SW 3.5.3 Targets of (p)ppGpp
guaB gmk rbgA infB
hflX dnaG era pgpH
gdpP hprT
SW 3.5.4 Targets of ZTP
zinU
SW 4 Lifestyles
padR yfiS bstA yfiU
yfhD yfhE yfhF yfhI
sspK yfhK spdL ephM
csbB yfhO yfhS fabL
sspE bcp perR spo0M
ygzA ygzC ygaK katA
yhbB yhbE yhbF prkA
yhbH cspB yhcM yhcN
yhcO yhcQ yhcT yhcV
yhdB yhdC nsrR ygxB
spoVR yhdF asiMB asiMA
sigM akrN plsC cueR
crcBA crcBB mscY nhaX
bmrC bmrD yheF sspB
spaD spaC yhaX yhaL
sscA yhaJ yhzF yhfA
pbpF yhfM yhfN hemAT
yhfW yhxC ctsR comK
yhxD mcsA ntdC ntdB
ntdA ntdR yhjO mcsB
yhjQ yhjR addB addA
sbcD sbcC gerPF gerPE
gerPD clpC gerPC gerPB
gerPA pchI yisJ yisN
radA asnO farP disA
yisY yisZ yitA yitB
slpH slpS yitE yitF
yitG yacL ispD yitQ
yitT yizC ispF yitZ
yjzC yjaU yjaV med
comZ yjzB fabF yjaZ
yjbA oppA oppB oppC
oppD oppF yjbB yjbC
spxA yjbE mecA coiA
pepF yizD spxH yjbI
cotO cotZ cotY cotX
cotW cotV yjcA yjzK
yjcZ spoVIF yjzE yjdH
cotT cotT yjfA yjgB
yjgC yjgD ppuG yjmC
yjmD uxuA uxuB exuT
exuR uxaB uxaA yjnA
yjoB rapA phrA xpdC
spoIISC spoIISB spoIISA mhqA
htrA ldcA pgl ddaH
hmpA ykzH ykjA proA
ohrA ohrR ohrB guaN
ykzD ykoN ykoP ykoQ
ykoS ykoT ligD ligV
ykoY sigI rsgI sspD
ktrD ykzP ykzE kinE
spo0E kinD mhqR motB
motA clpE ykvI ykvP
ykvQ ykvU stoA papB
splA splB ykwB mcpC
kinA cheV kre ykuC
ltdD ykuS mscT ykuV
rok sppO yaaC skiW
skiX skiY skiZ ampS
ykpC mreBH abhA kinC
ktrC ykzV speA ykzI
bipA ylaJ ylaK glsB
ctaA ylbB ylbC ylbD
ylbE ricF spoVV gerR
bshC spoVD spoVE murG
murB divIB ylxW ylxX
sbp spoIIGA sigG ylmC
ylyA fbnA tcaB remA
prkC spoVM ftsY ylqB
ylqH dprA flgB flgC
fliE fliF fliG fliH
fliI fliJ fliK flgD
flgE swrD fliL fliM
fliY cheY fliZ fliP
fliQ fliR flhB flhA
flhF flhG cheB cheA
cheW cheC cheD sigD
swrB ylxP pnpA ymxH
spoVFA spoVFB asd dapG
dapA tepA tepJ spoIIIE
bcbE efpI ymfJ rodZ
recA pbpX rny pdeB
spoVS ricA cotE ybaK
pksB pksC pksD pksE
acpK cwlD pksF pksG
pksH pksI pksJ pksL
pksM pksN pksR pksS
ymzB ymaD ebrB ebrA
ymaG gerD ymaF kbaA
cwlC spoVK pdaB alrB
yncE cotU cotC yndA
ynzB yndD yndE yndF
pghL yndM fosB spo0D
cotM sspP sspO ynzL
sspN sspT ynfE yngC
nrnB ldeE ldeF ldeG
lgeHB ldeHA ldeI ldeJ
ynzE yngK yngL ppsE
ppsD ppsC ppsB ppsA
proJ proH yoxC yoxB
yoaA yoaF yoaG yozQ
yoaH yoaI exlX yoaM
oxdD yoaQ yozT yozF
yoaR yoaU yoaW penP
yppS rapK phrK S718_716_asrE
S717_BsrG yobJ rttM rttL
yobN yobW czrA yocB
yocD desE desK desR
azoJ yocK yocL yoyB
yocM yozN yocN yozO
ybbC sqhC sodF sodC
yojK cdaS mdtK bshBB
gerT yojB arxR noxC
yodD yodE yodH yodI
yoyE yodL yozD yoyF
yodN yozE yokU kamA
kamB yodQ yodR yodS
yodT yoyG yoyG cgeE
cgeD cgeC cgeA cgeB
spsMn sprB sspC sigW
rsiW yoyJ spbT sunS
sunT sunA sunI bsrG_S809_BsrG
S810_asrG yokJ yokI yokG
aacD spsMc msrB msrA
dinF silP yplQ brxA
bsaA metAA ugtP cspD
ypzA ypeQ ypeP sspL
ypzF bpsB bpsA yptA
skfA ypzG cotD skfB
ypqA yppG yppD sspM
yppC recU ponA skfC
skfE bshA bshBA skfF
ypjB cheR spoIVA ypzH
yphB yphA ypzI ypfB
dgrA sleC sleB ypdA
ypbG rsiX sigX spmB
spmA dacB ypuD ypzC
ypzD ypuA lysA spoVAF
spoVAEA spoVAEB spoVAD spoVAC
spoVAB spoVAA sigF spoIIAB
spoIIAA csgA dacF spoIIM
ybxH mciZ ybxI yqjV
cypC yqjM yqjL ybyB
oxaAB yqjC yqjB brxB
bmrU bmr bmrR mmgF
mmgE mmgD mmgC mmgB
mmgA spo0A spoIVB ybeF
spoIIIAH spoIIIAG spoIIIAF spoIIIAE
spoIIIAD spoIIIAC spoIIIAB spoIIIAA
yqhV efp papA yqhR
yqhQ yqhP yqhO yqhH
yqhG sinI sinR tasA
sipW tapA yqzG spoIIT
comGG comGF comGE comGD
comGC comGB comGA yqxL
sleL yqhB rsbRD mgsR
yqgO yqgE sodA yqfZ
ispG yqfX yqfT yqfQ
yqfD yqfC yqfB floA
ybfJ nfeDA mtaB rsmE
prmA dnaJ dnaK grpE
hrcA yqxA spoIIP gpr
pssA comEC comEB comEA
comER yaaI ybfM sda
cwlH psd yqeC sigKn
spoIVCA arsC arsB yqcK
arsR yqcI rapE phrE
rttG rttF ybfO ybfP
txpA ratA_ratA ybfQ S977
yqaO yqaN yqzO sigKc
ybgB yrzN yrkC yrdP
czcD cypA aadK yraG
yraF adhB yraE yraD
adhR adhA sufL sigV
rsiV oatA yrhK cypB
bscR yrhH yrzA yrrS
pbpI yrrI glnQ glnH
glnM glnP yrzQ yrzR
yrrD yrzK secDF comN
spoVB yrbG ycbJ yrzE
bofC csbX alaP sgpA
safA obgE spo0B spoIVFB
spoIVFA minD minC mreD
mreC mreB ysxA maf
spoIIB comC cotN spoVID
lonA lonB cotQ ysnF
gerM gerE ycbP trxA
cwlJ ycbR sspI ysdB
ytxC speD ytbD spcF
phoR phoP ytwI ytvI
ytrH ytrI lmrB lmrA
ytkL tpx gerW ytfI
yteJ sppA sspA refZ
motS motP brxJ ytxH
ytxG ytpQ ytnP ytzH
ythQ ythP opuD yteV
rmgT ycdA ytvB yttB
bceB bceA bceS bceR
ytrF ytrE ytrD ytrC
ytrB ytrA ytzC tbcS
ytpA ytlA ytlC ytlD
rppG ytkC dps luxS
ytjA rpmEB ythA ythB
ytzL yteA ytdA ytcA
ytcB ytcC cotOO cotS
cotSA cotI ytaB glgP
ycdF glgA glgD glgC
glgB ycdG yuaI floT
nfeDB gbsB gbsA gbsR
bslA ktrA ktrB yubD
cdoA tlpB mcpA yceC
tlpA mcpB tgl yugU
yugT yugS yugP yceD
yuzI mstX kbfO yuzA
yceE yugF kinB kapB
kapD bofA yceF yuxJ
yceG yufS yceH comA
comP comX comQ degQ
cotIC pdeH yueG yuzE
yuzF yukD yceJ spsC
yumB opuAA opuAB cotNH
yutG opuAC yutC lytH
fisB yunC sspG yurS
glxB yurZ yusI yuzL
putM yuzM yusN mdtR
mdtP mdr cotNW mrgA
htrB cssR cssS gerAA
gerAB gerAC ycgF liaR
liaS liaF liaG liaH
liaI yvqJ ycgG yvrE
rsoA sigO yvrJ oxdC
ycgH rsiO ycgI sspJ
pgoN yvgO nadE bdbC
bdbD cadA copA copZ
csoR tmrB iolW azoRB
yvaC yvaE rnr estA
yvaM rghRA catR yvaQ
opuBD opuBC opuBB opuBA
sdpA sdpB spbC sdpI
sdpR opuCD opuCC opuCB
opuCA opcR yvbG cah
ycgL epsO epsN epsM
epsL epsK epsJ epsI
epsH epsG epsF epsE
epsD epsC epsB epsA
slrR padC racX pbpE
aspP yvdQ cotNP cotR
clpP ycgQ psdB psdA
psdS psdR ycgR yvcJ
trxB bmrA yvcA lgt
yvnB pchE yvlD yvlC
yvlB yvlA yvzB csbA
yvkA swrAAc swrAAn ctpB
ftsX ftsE hpf yvzG
fliT fliS fliD yvyC
hag csrA fliW flgL
flgK flgN flgM yvyF
comFC comFB comFA degU
tuaH tuaG tuaF lytC
tagU gtaB gerBA gerBB
gerBC ywtG tagT ywsB
ywrK ywrJ cotB cotH
NA ywrE chrS chrB
chrA yckC nfi rttO
rttN ywqI ywqH ptpZ
ptkA yckD tkmA ssbB
mscL rapD flhP flhO
mbl spoIIID usd nin
ywoG ywoD ywoC bcrC
nucA ywnJ spoIIQ ywnH
ywnG mta tlpC csbD
ywmF rapB hxlB ywmE
spoIID ywmB hxlA ywmA
hxlR ywlB spoIIR ywkF
srfAA rho spo0F srfAB
clsB uvsE ywjC comS
clsC srfAC sboA sboX
albA albB albC albD
albE albF albG srfAD
rapF phrF pbpG mmr
psrF bacG bacF bacE
bacD bacC bacB bacA
ywfA csfB bslB spsL
spsK spsJ spsI spsG
spsF spsE sfpAc spsD
spsC spsB spsA gerQ
sfpAn nfrAA rodA ywcE
ywzA slrC slrA vbfB
vbfA ywbO efeB glxA
ywbB ywbA epr gspA
ywaF bsdA relQ dltA
dltB dltC ubiX dltD
dltE yxzF aag bsdC
katX yxlH yxlG yxlF
yxlE yxlD yxlC sigY
xpaC bsdD nnrA yxzE
yclD aldY galE yxjJ
yxjI yxjF scoB scoA
yxjC yxiS katE citH
yczF gerKA wapI wapA
rtbE rtbD gerKC gerKB
yxeI cotNE yaaN yxeD
tpeM tpeL tpeK tpeJ
csbC htpG yxbG rapC
yxaM phrC qdoI qdoR
yxnA yxaB yczM ahpC
ahpF yczN yycQ yycP
yycO yycN htrC yycE
yycD yyzB cotF hypR
yybP ictI yybF yyaR
tetB tetL yyaL ccpB
exoA yyaD sprC parB
parA jag oxaAA gabD
glcU gdh pxpB pxpC
pxpR lipC ydaD lyxE
ydaF ydaG amj epsJ
ricT epsK ydaL ydaM
ydaN poxB ydaS ydaT
gsiB ydbD ddlA murF
cshA ydbS ydbT ydcA
ydcC ndoAI ndoA rsbV
rsbW sigB rsbX cmpA
lrpA lrpB sufLC cspC
ydeC prtG ydeR aseR
arsF veg ydfJ sspF
ydfN ydfO ydfP ydzH
ydzR ydfR ydfS cotP
ydgA ydgB vmlR ydgK
spoL ydhE ydhF phoB
ydhK ydhUc spoVG tsaE
groES groEL ctc pth
fin pspA ydjO ydjP
yeaA cotA spoVT yebC
remB yezF yerD opuE
spcP srfP spcQ yezG
yeeF rapH phrH cotK
divIC cotJA cotJB cotJC
yesJ yesK yabR lplD
yetF flvL flvM cypD
ltaSA spmH spmG yfnF
yfnE yfnD yfnC yfmS
copP copO yabS yfmI
prkT yfmA yflT tilS
yflN nosA yflJ yflH
hprT yflD yflB yflA
yfkT yfkS yfkR yfkQ
ftsH hypO sufLB yfkL
yfkJ yfkI rbn coaX
yfkF chaA yfkD mscC
pdaA hslO sspH catD
catE
SW 4.1 Exponential and early post-exponential lifestyles
yhbE yhbF hemAT comK
addB addA sbcD sbcC
farP med comZ oppA
oppB oppC oppD oppF
mecA coiA kinD motB
motA mcpC cheV kre
rok ampS kinC speA
ricF fbnA remA ylqH
dprA flgB flgC fliE
fliF fliG fliH fliI
fliJ fliK flgD flgE
swrD fliL fliM fliY
cheY fliZ fliP fliQ
fliR flhB flhA flhF
flhG cheB cheA cheW
cheC cheD sigD swrB
pnpA efpI recA rny
pdeB ricA yoaH rapK
phrK cheR dgrA oxaAB
spo0A efp sinI sinR
tasA sipW tapA comGG
comGF comGE comGD comGC
comGB comGA comEC comEB
comEA comER comN ysxA
maf comC lonA speD
motS motP ycdA luxS
floT bslA tlpB mcpA
tlpA mcpB mstX kbfO
comA comP comX comQ
degQ pdeH bdbC bdbD
yvaQ epsO epsN epsM
epsL epsK epsJ epsI
epsH epsG epsF epsE
epsD epsC epsB epsA
slrR yvcJ yvcA yvzB
swrAAc swrAAn yvzG fliT
fliS fliD yvyC hag
csrA fliW flgL flgK
flgN flgM yvyF comFC
comFB comFA degU lytC
ptpZ ptkA tkmA ssbB
rapD flhP flhO nin
nucA tlpC srfAA rho
srfAB comS srfAC srfAD
rapF phrF sfpAc sfpAn
slrC slrA epr galE
rapC phrC yxaB veg
remB yfmS ftsH
SW 4.1.1 Motility and chemotaxis
yhbE yhbF hemAT motB
motA mcpC cheV ylqH
flgB flgC fliE fliF
fliG fliH fliI fliJ
fliK flgD flgE fliL
fliM fliY cheY fliZ
fliP fliQ fliR flhB
flhA flhF flhG cheB
cheA cheW cheC cheD
sigD swrB yoaH cheR
dgrA lonA motS motP
ycdA luxS tlpB mcpA
tlpA mcpB pdeH yvaQ
epsE yvzB swrAAc swrAAn
yvzG fliT fliS fliD
yvyC hag csrA fliW
flgL flgK flgN flgM
yvyF lytC flhP flhO
tlpC rho epr yfmS
SW 4.1.1.1 Signal transduction in motility and chemotaxis
hemAT mcpC cheV fliY
cheY cheB cheA cheW
cheC cheD sigD swrB
yoaH cheR dgrA lonA
luxS tlpB mcpA tlpA
mcpB pdeH yvaQ epsE
swrAAc swrAAn yvzG csrA
flgM tlpC rho epr
yfmS
SW 4.1.1.1.1 Soluble signalling proteins
cheY cheB cheA cheC
cheD cheR
SW 4.1.1.1.2 Coupling proteins
cheV cheW
SW 4.1.1.1.3 Soluble chemoreceptors
hemAT yfmS
SW 4.1.1.1.4 Membrane-bound chemoreceptors
mcpC yoaH tlpB mcpA
tlpA mcpB yvaQ tlpC
SW 4.1.1.1.5 Additional chemotaxis signal transduction and regulatory proteins
fliY sigD swrB dgrA
lonA luxS pdeH epsE
swrAAc swrAAn yvzG csrA
flgM rho epr
SW 4.1.1.2 Flagellar proteins
yhbE yhbF motB motA
flgB flgC fliE fliF
fliG fliH fliI fliJ
fliK flgD flgE fliL
fliM fliY fliZ fliP
fliQ fliR flhB flhA
flhF motS motP fliT
fliS fliD hag fliW
flgL flgK flgN flhP
flhO
SW 4.1.1.3 Flagellar proteins/ based on similarity
ylqH yvzB yvyC yvyF
SW 4.1.1.4 Motility and chemotaxis/ other
flhG ycdA lytC
SW 4.1.2 Biofilm formation
hemAT farP kinD motA
cheV ampS kinC speA
ricF fbnA remA fliF
flgE cheY cheA cheD
sigD rny pdeB ricA
spo0A sinI sinR tasA
sipW tapA speD luxS
floT bslA mstX kbfO
degQ epsO epsN epsM
epsL epsK epsJ epsI
epsH epsG epsF epsE
epsD epsC epsB epsA
slrR yvcA swrAAc swrAAn
hag degU ptpZ ptkA
tkmA sfpAc sfpAn slrC
slrA galE yxaB veg
remB ftsH
SW 4.1.2.1 Matrix polysaccharide synthesis
epsO epsN epsM epsL
epsK epsJ epsI epsH
epsG epsF epsE epsD
epsC epsB epsA galE
SW 4.1.2.2 Amyloid protein synthesis, secretion and assembly
tasA sipW tapA
SW 4.1.2.3 Repellent surface layer
bslA
SW 4.1.2.4 Regulation
kinD kinC pdeB spo0A
sinI sinR mstX kbfO
degQ slrR degU ptpZ
ptkA tkmA slrA veg
ftsH
SW 4.1.2.5 Other proteins required for biofilm formation
farP ampS speA ricF
fbnA remA rny ricA
speD luxS floT yvcA
swrAAc swrAAn sfpAc sfpAn
slrC yxaB remB
SW 4.1.2.6 Other proteins required for efficient pellicle biofilm formation
hemAT motA cheV fliF
flgE cheY cheA cheD
sigD hag
SW 4.1.3 Genetic competence
comK addB addA sbcD
sbcC med comZ oppA
oppB oppC oppD oppF
mecA coiA motB kre
rok dprA pnpA recA
rapK phrK oxaAB comGG
comGF comGE comGD comGC
comGB comGA comEC comEB
comEA comER comN ysxA
maf comC comA comP
comX comQ bdbC bdbD
yvcJ hag comFC comFB
comFA ssbB rapD nin
nucA comS rapF phrF
rapC phrC
SW 4.1.4 Swarming
swrD cheY flhG cheA
sigD efpI efp sinR
slrR swrAAc hag srfAA
srfAB srfAC srfAD slrA
SW 4.2 Sporulation
yfhD sspK yfhS fabL
sspE spo0M ygzA ygzC
ygaK yhbB prkA yhbH
yhcM yhcN yhcO yhcQ
yhcT yhcV yhdB yhdC
spoVR yheF sspB spaD
spaC yhaX yhaL sscA
yhzF yhfA pbpF yhfM
yhfN yhfW yhxC mcsA
mcsB yhjQ yhjR gerPF
gerPE gerPD clpC gerPC
gerPB gerPA pchI yisJ
yisN asnO farP disA
yisY yisZ yitA yitB
slpH slpS yitE yitF
yitG yitQ yizC yjzC
yjaU yjaV yjzB yjaZ
yjbA oppA oppB oppC
oppD oppF yjbE pepF
yizD cotO cotZ cotY
cotX cotW cotV yjcA
yjzK yjcZ spoVIF yjdH
cotT cotT yjfA yjmC
yjmD uxuA uxuB exuT
exuR uxaB uxaA yjnA
rapA phrA xpdC spoIISB
spoIISA ykzH ykjA ykzD
ykoN ykoP ykoQ ykoS
ykoT ligD ligV ykoY
sspD ykzP ykzE kinE
spo0E kinD ykvI ykvP
ykvQ ykvU stoA splA
splB ykwB kinA ltdD
ykuS sppO yaaC ykpC
kinC ykzV ylaJ ylaK
glsB ctaA ylbB ylbC
ylbD ylbE ricF spoVV
gerR spoVD spoVE murG
murB divIB ylxW ylxX
sbp spoIIGA sigG ylmC
ylyA tcaB prkC spoVM
ftsY ylqB ymxH spoVFA
spoVFB asd dapG dapA
tepA tepJ spoIIIE bcbE
ymfJ rodZ spoVS ricA
cotE ybaK cwlD ymaG
gerD ymaF kbaA cwlC
spoVK pdaB alrB yncE
cotU cotC yndA ynzB
yndD yndE yndF pghL
yndM spo0D cotM sspP
sspO ynzL sspN sspT
ynfE nrnB ldeE ldeF
ldeG lgeHB ldeHA ldeI
ldeJ ynzE yngK yngL
yozQ yoaI yoaM oxdD
yoaQ yozT yozF yoaR
yoaU yoaW yobN yobW
yocL yoyB yozN yocN
ybbC sqhC sodF cdaS
gerT yojB yodH yodI
yoyE yodL yozD yoyF
yodN yozE yokU kamA
kamB yodQ yodR yodS
yodT yoyG yoyG cgeE
cgeD cgeC cgeA cgeB
spsMn sprB sspC spsMc
ypzA ypeQ ypeP sspL
ypzF bpsB bpsA yptA
ypzG cotD ypqA yppG
yppD sspM yppC ypjB
spoIVA ypzH yphB yphA
ypzI ypfB sleC sleB
spmB spmA dacB ypzC
ypzD lysA spoVAF spoVAEA
spoVAEB spoVAD spoVAC spoVAB
spoVAA sigF spoIIAB spoIIAA
csgA dacF spoIIM ybxH
mciZ yqjC yqjB mmgF
mmgE mmgD mmgC mmgB
mmgA spo0A spoIVB ybeF
spoIIIAH spoIIIAG spoIIIAF spoIIIAE
spoIIIAD spoIIIAC spoIIIAB spoIIIAA
yqhV yqhR yqhQ yqhP
yqhO yqhH yqhG yqzG
spoIIT sleL yqgO yqgE
yqfZ ispG yqfX yqfT
yqfQ yqfD yqfC ybfJ
yqxA spoIIP gpr comER
sda cwlH yqeC sigKn
spoIVCA yqcK yqcI rapE
phrE yqaO yqaN yqzO
sigKc yrzN yrkC cypA
yraG yraF adhB yraE
yraD yrzA yrrS pbpI
yrrI glnQ glnH glnM
glnP yrzQ yrzR yrrD
yrzK spoVB yrbG yrzE
bofC csbX alaP sgpA
safA obgE spo0B spoIVFB
spoIVFA spoIIB cotN spoVID
lonB cotQ gerM gerE
cwlJ sspI ytxC spcF
phoR phoP ytwI ytvI
ytrH ytrI gerW ytfI
sspA refZ ytzH yteV
rmgT ytvB ytzC ytlA
ytlC ytlD rppG ytkC
ythA ythB ytzL yteA
ytdA ytcA ytcB ytcC
cotOO cotS cotSA cotI
glgP glgA glgD glgC
glgB floT bslA cdoA
tgl yugT yugS yugP
yuzI mstX kbfO yuzA
yugF kinB kapB kapD
bofA yufS cotIC yueG
yuzE yuzF spsC yumB
cotNH yutG yutC lytH
fisB yunC sspG yurS
yurZ yuzL putM yuzM
yusN cotNW gerAA gerAB
gerAC ycgF ycgG ycgH
ycgI sspJ bdbC bdbD
azoRB yvaC yvaM rghRA
ycgL aspP yvdQ cotNP
cotR lgt yvnB ctpB
ftsX ftsE tuaH tuaG
tuaF gerBA gerBB gerBC
ywrK ywrJ cotB cotH
NA chrA yckC nfi
rttO rttN ywqI ywqH
yckD mbl spoIIID usd
ywoD ywoC ywnJ spoIIQ
ywnG rapB spoIID ywmB
ywmA spoIIR ywkF spo0F
clsB uvsE pbpG psrF
csfB bslB spsL spsK
spsJ spsI spsG spsF
spsE spsD spsC spsB
spsA gerQ ywcE vbfB
vbfA ywbB ywbA ywaF
katX yxjF scoB scoA
yxjC citH yczF gerKA
gerKC gerKB cotNE yxeD
yycQ yycP yycO yycN
htrC yycE yyzB cotF
yybP ictI yyaL ccpB
exoA yyaD sprC parB
parA jag oxaAA glcU
gdh pxpB pxpC pxpR
lipC ricT ydcA ydcC
cmpA lrpA lrpB prtG
sspF ydzH ydzR ydfR
ydfS cotP ydgA ydgB
spoL ydhF phoB spoVG
fin ydjP yeaA cotA
spoVT yezF spcP spcQ
rapH phrH cotK divIC
cotJA cotJB cotJC yesJ
yesK yabR lplD yetF
cypD spmH spmG yfnF
yfnE yfnD yabS prkT
yfmA yflN yflJ yfkT
yfkS yfkR yfkQ chaA
pdaA sspH
SW 4.2.1 Sporulation proteins
yfhD sspK yfhS fabL
sspE ygzA ygzC ygaK
yhbB prkA yhbH yhcM
yhcO yhcQ yhcT yhcV
yhdB yhdC spoVR yheF
sspB spaD spaC yhaX
yhaL sscA yhzF yhfA
pbpF yhfM yhfN yhfW
yhxC mcsA mcsB yhjQ
yhjR clpC yisJ yisN
asnO yisY yisZ yitA
yitB slpH slpS yitE
yitF yitG yitQ yizC
yjzC yjaU yjaV yjzB
yjaZ yjbA yjbE yizD
cotO cotZ cotY cotX
cotW cotV yjcA yjzK
yjcZ spoVIF yjdH cotT
cotT yjfA yjmC yjmD
uxuA uxuB exuT exuR
uxaB uxaA yjnA xpdC
spoIISA ykzH ykjA ykzD
ykoN ykoP ykoQ ykoS
ykoT ligD ligV ykoY
sspD ykzP ykzE ykvI
ykvP ykvQ stoA splA
splB ykwB ltdD ykuS
sppO yaaC ykpC ykzV
ylaK glsB ctaA ylbB
ylbC ylbD ylbE spoVV
gerR spoVD spoVE murG
murB divIB ylxW ylxX
sbp sigG ylmC ylyA
tcaB spoVM ftsY ymxH
spoVFA spoVFB asd dapG
dapA bcbE ymfJ cotE
ybaK cwlD ymaG ymaF
cwlC spoVK pdaB alrB
yncE cotU cotC yndA
pghL yndM cotM sspP
sspO ynzL sspN sspT
ynfE nrnB ldeE ldeF
ldeG lgeHB ldeHA ldeI
ldeJ ynzE yngK yngL
yozQ yoaI yoaM oxdD
yoaQ yozT yozF yoaR
yoaU yoaW yobN yobW
yocL yoyB yozN yocN
ybbC sqhC sodF cdaS
gerT yojB yodH yodI
yoyE yodL yozD yoyF
yodN yozE yokU kamA
kamB yodQ yodR yodS
yodT yoyG yoyG cgeE
cgeD cgeC cgeA cgeB
spsMn sprB sspC spsMc
ypzA ypeQ ypeP sspL
ypzF bpsB bpsA yptA
ypzG cotD ypqA yppG
yppD sspM yppC ypjB
spoIVA ypzH yphB yphA
ypzI ypfB spmB spmA
dacB ypzC ypzD lysA
spoVAF spoVAC spoVAB spoVAA
sigF spoIIAB spoIIAA dacF
spoIIM ybxH mciZ yqjC
yqjB mmgF mmgE mmgD
mmgC mmgB mmgA spoIVB
ybeF spoIIIAH spoIIIAG spoIIIAF
spoIIIAE spoIIIAD spoIIIAC spoIIIAB
spoIIIAA yqhV yqhR yqhQ
yqhP yqhO yqhH yqhG
yqzG sleL yqgO yqgE
yqfZ ispG yqfX yqfT
yqfQ yqfD yqfC ybfJ
yqxA spoIIP comER cwlH
yqeC sigKn spoIVCA yqcK
yqcI yqaO yqaN yqzO
sigKc yrzN yrkC cypA
yraG yraF adhB yraE
yraD yrzA yrrS pbpI
yrrI glnQ glnH glnM
glnP yrzQ yrzR yrrD
yrzK spoVB yrbG yrzE
bofC csbX alaP sgpA
safA spoIVFB spoIVFA cotN
spoVID lonB cotQ cwlJ
sspI ytxC phoR phoP
ytwI ytvI ytrH ytrI
ytfI sspA refZ ytzH
yteV rmgT ytvB ytzC
ytlA ytlC ytlD rppG
ytkC ythA ythB ytzL
yteA ytdA ytcA ytcB
ytcC cotOO cotS cotSA
cotI glgP glgA glgD
glgC glgB cdoA tgl
yugT yugS yugP yuzI
mstX kbfO yuzA yugF
bofA yufS cotIC yueG
yuzE yuzF spsC yumB
cotNH yutG yutC lytH
fisB yunC sspG yurS
yurZ yuzL putM yuzM
yusN cotNW ycgF ycgG
ycgH ycgI sspJ bdbC
bdbD azoRB yvaC yvaM
ycgL aspP yvdQ cotNP
cotR yvnB ctpB tuaH
tuaG tuaF ywrK ywrJ
cotB cotH NA yckC
nfi rttO rttN ywqI
ywqH yckD mbl spoIIID
usd ywoD ywoC ywnJ
spoIIQ ywnG spoIID ywmA
spoIIR ywkF clsB uvsE
pbpG psrF csfB spsL
spsK spsJ spsI spsG
spsF spsE spsD spsC
spsB spsA gerQ vbfB
vbfA ywbB ywbA ywaF
katX yxjF scoB scoA
yxjC citH cotNE yxeD
yycQ yycP yycO yycN
htrC yycE yyzB cotF
yybP ictI yyaL ccpB
exoA yyaD sprC glcU
lipC ydcA ydcC cmpA
prtG sspF ydzH ydzR
ydfR ydfS cotP ydgA
ydgB spoL ydhF phoB
fin ydjP yeaA cotA
spoVT yezF spcP spcQ
cotK divIC cotJA cotJB
cotJC yesJ yesK yabR
lplD yetF cypD spmH
spmG yfnF yfnE yfnD
yabS prkT yfmA yflN
yflJ chaA pdaA sspH
SW 4.2.1.1 Spore coat proteins
ygaK yhbB spaD spaC
yhaX yhjR yisJ yisY
yjzB cotO cotZ cotY
cotX cotW cotV yjdH
cotT cotT xpdC ykvP
ltdD sppO ylbD gerR
spoVM cotE ymaG alrB
cotU cotC cotM oxdD
yobN gerT yodI cgeE
cgeD cgeC cgeA cgeB
ypeP cotD yppG spoIVA
sleL yqfT safA cotN
spoVID cotQ cwlJ cotOO
cotS cotSA cotI tgl
cotIC cotNH cotNP cotR
cotB cotH NA ywqH
spsB gerQ cotNE cotF
ictI lipC cmpA prtG
cotP spoL cotA cotK
cotJA cotJB cotJC
SW 4.2.1.1.1 Class I
yhaX spoVM spoIVA sleL
spoVID cotIC
SW 4.2.1.1.2 Class II
spaD yhjR cotO sppO
cotE alrB cotM
SW 4.2.1.1.3 Class III
yisY cotZ cotN cwlJ
tgl cotNH
SW 4.2.1.1.4 Class IV
cotT cotT cotQ ictI
SW 4.2.1.1.5 Class V
yjzB cotW xpdC ylbD
ymaG oxdD yppG cotOO
cotS cotNP cotB NA
cotNE lipC cotP cotA
cotK
SW 4.2.1.1.7 Class VI
cotU cotD
SW 4.2.1.1.8 Not yet assigned
ygaK yhbB spaC yisJ
cotY cotX cotV yjdH
ykvP ltdD gerR cotC
yobN gerT yodI cgeE
cgeD cgeC cgeA cgeB
ypeP yqfT safA cotSA
cotI cotR cotH ywqH
spsB gerQ cotF cmpA
prtG spoL cotJA cotJB
cotJC
SW 4.2.1.2 Spore coat protein/ based on similarity
yraG yraF yraE yraD
yvdQ
SW 4.2.1.3 Small acid-soluble spore proteins
sspK sspE sspB sspD
sspP sspO sspN sspC
sspL sspM sspI sspA
sspG sspJ sspF sspH
SW 4.2.1.4 Sporulation proteins/ other
yfhD fabL prkA yhbH
yhcM yhcO yhcQ yhcV
spoVR yhaL sscA pbpF
yhfM yhfW yhxC mcsA
mcsB clpC asnO yisZ
yitA yitB slpH slpS
yitF yitG yjaV yjbA
yjcA spoVIF yjfA yjmC
yjmD uxuA uxuB exuT
exuR uxaB uxaA spoIISA
ligD ligV ykvI ykvQ
stoA splA splB ctaA
ylbB ylbC ylbE spoVV
spoVD spoVE murG murB
divIB ylxW ylxX sbp
sigG ylmC ylyA tcaB
ftsY ymxH spoVFA spoVFB
asd dapG dapA ybaK
cwlD cwlC spoVK pdaB
yndA pghL sspT ldeE
ldeF ldeG lgeHB ldeHA
ldeI ldeJ yozQ yoaR
yoaW yobW yocL sqhC
sodF cdaS yodH yokU
kamA kamB yodQ yodR
yodS yodT sprB ypzA
ypzF ypqA ypjB yphB
yphA ypfB spmB spmA
dacB lysA spoVAF spoVAC
spoVAB spoVAA sigF spoIIAB
spoIIAA dacF spoIIM ybxH
yqjC mmgF mmgE mmgD
mmgC mmgB mmgA spoIVB
spoIIIAH spoIIIAG spoIIIAF spoIIIAE
spoIIIAD spoIIIAC spoIIIAB spoIIIAA
yqhQ yqhP yqhH yqhG
yqzG yqfZ ispG yqfX
yqfQ yqfD yqfC yqxA
spoIIP cwlH sigKn spoIVCA
yqcK sigKc yrkC adhB
yrrS pbpI glnQ glnH
glnM glnP yrrD spoVB
bofC csbX sgpA spoIVFB
spoIVFA lonB ytxC phoR
phoP ytvI ytrH ytrI
ytfI refZ yteV ytlA
ytlC ytlD rppG yteA
ytcB ytcC glgP glgA
glgD glgC glgB yuzA
bofA spsC lytH fisB
yurS yusN ycgF ycgG
bdbC bdbD azoRB aspP
ctpB tuaH tuaG tuaF
ywrJ yckC yckD mbl
spoIIID usd ywnJ spoIIQ
spoIID spoIIR clsB uvsE
pbpG psrF csfB spsL
spsK spsJ spsI spsG
spsF spsE spsD spsC
spsA vbfB vbfA katX
yxjF scoB scoA yxjC
yxeD htrC ccpB exoA
yyaD sprC glcU ydcA
ydcC ydfR ydfS ydgA
ydgB ydhF phoB fin
ydjP yeaA spoVT spcP
spcQ divIC yesJ yesK
yabR spmH spmG yfnF
yfnE yfnD prkT chaA
pdaA
SW 4.2.1.5 Newly identified sporulation proteins (based on transcription profiling)
yfhS ygzA ygzC yhcT
yhdB yhdC yheF yhzF
yhfA yhfN yhjQ yisN
yitE yitQ yizC yjzC
yjaU yjaZ yjbE yizD
yjzK yjcZ yjnA ykzH
ykjA ykzD ykoN ykoP
ykoQ ykoS ykoT ykoY
ykzP ykzE ykwB ykuS
yaaC ykpC ykzV ylaK
glsB bcbE ymfJ ymaF
yncE yndM ynzL ynfE
nrnB ynzE yngK yngL
yoaI yoaM yoaQ yozT
yozF yoaU yoyB yozN
yocN ybbC yojB yoyE
yodL yozD yoyF yodN
yozE yoyG yoyG spsMn
spsMc ypeQ bpsB bpsA
yptA ypzG yppD yppC
ypzH ypzI ypzC ypzD
mciZ yqjB ybeF yqhV
yqhR yqhO yqgO yqgE
ybfJ comER yqeC yqcI
yqaO yqaN yqzO yrzN
cypA yrzA yrrI yrzQ
yrzR yrzK yrbG yrzE
alaP ytwI ytzH rmgT
ytvB ytzC ytkC ythA
ythB ytzL ytdA ytcA
cdoA yugT yugS yugP
yuzI mstX kbfO yugF
yufS yueG yuzE yuzF
yumB yutG yutC yunC
yurZ yuzL putM yuzM
cotNW ycgH ycgI yvaC
yvaM ycgL yvnB ywrK
nfi rttO rttN ywqI
ywoD ywoC ywnG ywmA
ywkF ywbB ywbA ywaF
citH yycQ yycP yycO
yycN yycE yyzB yybP
yyaL ydzH ydzR yezF
lplD yetF cypD yabS
yfmA yflN yflJ
SW 4.2.2 phosphorelay
pchI farP oppA oppB
oppC oppD oppF pepF
rapA phrA kinE spo0E
kinD kinA kinC ricF
ylqB ricA kbaA spo0D
spo0A sda rapE phrE
obgE spo0B bslA kinB
kapB kapD rghRA ftsX
ftsE rapB spo0F bslB
pxpB pxpC pxpR ricT
lrpA lrpB rapH phrH
SW 4.2.2.1 The kinases
kinE kinD kinA kinC
kinB
SW 4.2.2.2 Proteins controlling the activity of the kinases
ylqB kbaA sda bslA
kapB bslB pxpB pxpC
SW 4.2.2.3 The phosphotransferases
spo0B spo0F
SW 4.2.2.4 The ultimate target
spo0A
SW 4.2.2.5 Phosphatases controlling the phosphorelay
pchI rapA spo0E spo0D
rapE rapB rapH
SW 4.2.2.6 Other protein controlling the activity of the phosphorelay
phrA ricF ricA phrE
ricT phrH
SW 4.2.3 Sporulation/ other
spo0M disA spoIISB spoIIGA
spoIIIE rodZ spoVS spoIIT
spoIIB spcF floT chrA
ywmB ywcE parB parA
jag oxaAA spoVG
SW 4.2.4 Germination
yhcN gerPF gerPE gerPD
gerPC gerPB gerPA ykvU
ylaJ prkC tepA tepJ
gerD gerT sleC sleB
spoVAEA spoVAEB spoVAD csgA
gpr gerM gerE cwlJ
gerW gerAA gerAB gerAC
lgt gerBA gerBB gerBC
gerQ ywcE yczF gerKA
gerKC gerKB gdh lipC
SW 4.2.4.1 Germinant receptors
gerAA gerAB gerAC gerBA
gerBB gerBC yczF gerKA
gerKC gerKB
SW 4.2.4.2 Additional germination proteins
yhcN gerPF gerPE gerPD
gerPC gerPB gerPA ykvU
ylaJ prkC tepA tepJ
gerD gerT sleC sleB
spoVAEA spoVAEB spoVAD csgA
gpr gerM gerE cwlJ
gerW lgt gerQ ywcE
gdh lipC
SW 4.2.5 Germination/ based on similarity
ynzB yndD yndE yndF
yfkT yfkS yfkR yfkQ
SW 4.3 Coping with stress
padR yfiS bstA yfiU
yfhD yfhE yfhF yfhI
yfhK spdL ephM csbB
yfhO bcp perR spo0M
katA cspB yhcM nsrR
ygxB yhdF asiMB asiMA
sigM akrN plsC cueR
crcBA crcBB mscY nhaX
bmrC bmrD yhaJ ctsR
yhxD mcsA ntdC ntdB
ntdA ntdR yhjO mcsB
clpC radA disA yitG
yacL ispD yitT ispF
yitZ fabF yjbB yjbC
spxA spxH yjbI yjzE
yjgB yjgC yjgD ppuG
yjoB xpdC spoIISC spoIISB
spoIISA mhqA htrA ldcA
pgl ddaH hmpA proA
ohrA ohrR ohrB guaN
sigI rsgI ktrD mhqR
clpE papB ykuC mscT
ykuV skiW skiX skiY
skiZ mreBH abhA ktrC
ykzI bipA bshC murB
divIB ylxW ylxX sbp
flhG ylxP pbpX pksB
pksC pksD pksE acpK
pksF pksG pksH pksI
pksJ pksL pksM pksN
pksR pksS ymzB ymaD
ebrB ebrA fosB yngC
ppsE ppsD ppsC ppsB
ppsA proJ proH yoxC
yoxB yoaA yoaF yoaG
oxdD penP yppS S718_716_asrE
S717_BsrG yobJ rttM rttL
czrA yocB yocD desE
desK desR azoJ yocK
yocM yozO sqhC sodF
sodC yojK mdtK bshBB
arxR noxC yodD yodE
sigW rsiW yoyJ spbT
sunS sunT sunA sunI
bsrG_S809_BsrG S810_asrG yokJ yokI
yokG aacD msrB msrA
dinF silP brxA bsaA
metAA ugtP cspD bpsB
bpsA skfA skfB recU
ponA skfC skfE bshA
bshBA skfF ypdA ypbG
rsiX sigX ypuD ypuA
spoVAC ybxI yqjV cypC
yqjM yqjL ybyB brxB
bmrU bmr bmrR papA
yqhQ yqhP yqxL sleL
yqhB rsbRD mgsR sodA
yqfB floA nfeDA mtaB
rsmE prmA dnaJ dnaK
grpE hrcA pssA yaaI
ybfM psd arsC arsB
yqcK arsR rttG rttF
ybfO ybfP txpA ratA_ratA
ybfQ S977 ybgB yrdP
czcD aadK adhR adhA
sufL sigV rsiV oatA
yrhK cypB bscR yrhH
secDF ycbJ bofC csbX
minD minC mreD mreC
mreB ysxA ysnF ycbP
trxA ycbR ysdB ytbD
phoR phoP lmrB lmrA
ytkL tpx yteJ sppA
brxJ ytxH ytxG ytpQ
ytnP ythQ ythP opuD
yttB bceB bceA bceS
bceR ytrF ytrE ytrD
ytrC ytrB ytrA tbcS
ytpA dps rpmEB ytaB
ycdF ycdG yuaI floT
nfeDB gbsB gbsA gbsR
ktrA ktrB yubD yceC
yugU yceD yuzA yceE
yceF yuxJ yceG yceH
yukD yceJ opuAA opuAB
opuAC glxB yusI mdtR
mdtP mdr mrgA htrB
cssR cssS liaR liaS
liaF liaG liaH liaI
yvqJ yvrE rsoA sigO
yvrJ oxdC rsiO pgoN
yvgO nadE cadA copA
copZ csoR tmrB iolW
azoRB yvaE rnr estA
catR opuBD opuBC opuBB
opuBA sdpA sdpB spbC
sdpI sdpR opuCD opuCC
opuCB opuCA opcR yvbG
cah padC racX pbpE
clpP ycgQ psdB psdA
psdS psdR ycgR trxB
bmrA pchE yvlD yvlC
yvlB yvlA csbA yvkA
hpf tagU gtaB ywtG
tagT ywsB ywrK ywrE
chrS chrB chrA rttO
rttN mscL rapD ywoG
bcrC ywnJ ywnH mta
csbD ywmF hxlB ywmE
hxlA hxlR ywlB srfAA
srfAB ywjC clsC srfAC
sboA sboX albA albB
albC albD albE albF
albG srfAD mmr bacG
bacF bacE bacD bacC
bacB bacA ywfA sfpAc
sfpAn nfrAA rodA ywzA
ywbO efeB glxA gspA
bsdA relQ dltA dltB
dltC ubiX dltD dltE
yxzF aag bsdC katX
yxlH yxlG yxlF yxlE
yxlD yxlC sigY xpaC
bsdD nnrA yxzE yclD
aldY yxjJ yxjI yxiS
katE wapI wapA rtbE
rtbD yxeI yaaN tpeM
tpeL tpeK tpeJ csbC
htpG yxbG yxaM qdoI
qdoR yxnA yxaB yczM
ahpC ahpF yczN yycD
hypR yybF yyaR tetB
tetL gabD ydaD lyxE
ydaF ydaG amj epsJ
epsK ydaL ydaM ydaN
poxB ydaS ydaT gsiB
ydbD ddlA murF cshA
ydbS ydbT ndoAI ndoA
rsbV rsbW sigB rsbX
sufLC cspC ydeC ydeR
aseR arsF ydfJ ydfN
ydfO ydfP vmlR ydgK
ydhE ydhK ydhUc tsaE
groES groEL ctc pth
pspA ydjO ydjP yeaA
yebC yerD opuE srfP
yezG yeeF divIC flvL
flvM ltaSA yfnC copP
copO yfmI yflT tilS
nosA yflH hprT yflD
yflB yflA yfkT yfkS
ftsH hypO sufLB yfkL
yfkJ yfkI rbn coaX
yfkF chaA yfkD mscC
hslO catD catE
SW 4.3.1 General stress proteins (controlled by SigB)
yfhD yfhE yfhF yfhK
spdL ephM csbB yfhO
yhcM ygxB yhdF akrN
plsC nhaX ctsR yhxD
mcsA mcsB clpC radA
disA yacL ispD yitT
ispF yjbC spxA yjzE
yjgB yjgC yjgD pgl
ddaH ohrB guaN mscT
ykzI ylxP ymzB yoxC
yoxB yoaA yocB yocK
ypuD cypC yqjL ybyB
bmrU bmr bmrR yqhQ
yqhP yqxL sleL yqhB
rsbRD mgsR sodA yaaI
sufL bofC csbX ysnF
ycbP trxA ysdB phoR
phoP ytkL brxJ ytxH
ytxG dps rpmEB ytaB
ycdF ycdG yceC yugU
yceD yuzA yceE yceF
yceG yceH yvrE pgoN
yvgO nadE iolW estA
yvbG clpP csbA hpf
gtaB ywtG ywsB csbD
ywmF ywmE ywlB ywjC
clsC ywzA gspA yxzF
aag katX nnrA aldY
yxjJ yxjI yxiS katE
csbC yxbG yxnA yxaB
yycD gabD ydaD lyxE
ydaF ydaG epsJ epsK
ydaL ydaM ydaN poxB
ydaS ydaT gsiB ydbD
rsbV rsbW sigB rsbX
ydeC ydfO ydfP ydhK
ctc pth yerD opuE
yflT yflH yflD yflB
yflA yfkT yfkS sufLB
yfkJ yfkI rbn chaA
yfkD
SW 4.3.10 Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)
padR nsrR crcBA crcBB
spxH yjbI hmpA oxdD
padC bsdA ubiX bsdC
bsdD yclD qdoI qdoR
flvL flvM
SW 4.3.11 Resistance against toxic metals
cueR czrA arsC arsB
yqcK arsR yrdP czcD
cadA copA copZ csoR
chrS chrB chrA aseR
arsF
SW 4.3.12 Resistance against toxic metals/ based on similarity
ycbR yceC yceD yceE
yceF yusI ywrK
SW 4.3.13 Resistance against toxins/ antibiotics
spdL sigM bmrC bmrD
skiW skiX skiY skiZ
flhG ebrB ebrA fosB
penP yppS sunI ybxI
bmrU bmr bmrR yqfB
floA nfeDA aadK lmrB
lmrA ytnP bceB bceA
bceS bceR ytrA mdtR
mdtP mdr liaR liaS
liaF liaG liaH liaI
tmrB cah psdB psdA
psdS psdR bmrA mta
mmr yxeI tpeM tpeL
tpeK tpeJ yyaR tetB
tetL ydbS ydbT vmlR
srfP
SW 4.3.14 Resistance against toxins/ antibiotics/ based on similarity
yfiS yfiU yfhI yhjO
yitG yitZ yjbB ppuG
ykuC yojK mdtK aacD
dinF yqjV ybfO ycbJ
ytbD yttB yubD yuxJ
yceJ yvqJ yvaE pchE
yvkA ywoG bcrC ywnH
ywfA yxlH yxaM yybF
ydeR ydfJ ydgK ydhE
yfnC copP copO yfmI
yfkL yfkF
SW 4.3.15 Biosynthesis of antibacterial compounds
ntdC ntdB ntdA ntdR
pksB pksC pksD pksE
acpK pksF pksG pksH
pksI pksJ pksL pksM
pksN pksR pksS ppsE
ppsD ppsC ppsB ppsA
sunS sunT sunA bpsB
bpsA srfAA srfAB srfAC
sboA sboX albA albB
albC albD albE albF
albG srfAD bacG bacF
bacE bacD bacC bacB
bacA sfpAc sfpAn nosA
SW 4.3.16 Biosynthesis of antibacterial compounds/ based on similarity
yhaJ yukD
SW 4.3.17 Toxins, antitoxins and immunity against toxins
spoIISC spoIISB spoIISA S718_716_asrE
S717_BsrG rttM rttL yoyJ
spbT sunA sunI bsrG_S809_BsrG
S810_asrG yokJ yokI skfA
skfB skfC skfE skfF
rttG rttF txpA ratA_ratA
S977 sdpA sdpB spbC
sdpI sdpR rttO rttN
rtbE rtbD ndoAI ndoA
yezG yeeF
SW 4.3.17.1 Type 1 TA systems
S718_716_asrE S717_BsrG yoyJ spbT
bsrG_S809_BsrG S810_asrG txpA ratA_ratA
S977
SW 4.3.17.2 Type 2 TA systems
spoIISC spoIISB spoIISA rttM
rttL yokJ yokI rttG
rttF rttO rttN rtbE
rtbD ndoAI ndoA yezG
yeeF
SW 4.3.18 Toxins, antitoxins and immunity against toxins/ based on similarity
ldcA rttM rttL yocD
spbT yokJ yokI yokG
rttG rttF ybgB rttN
wapI wapA rtbE rtbD
yczM yczN yezG yeeF
SW 4.3.2 Cell envelope stress proteins (controlled by SigM, V, W, X, Y)
spdL ephM csbB yfhO
spo0M asiMB asiMA sigM
disA yacL ispD fabF
yjbC spxA yjoB skiW
skiX skiY skiZ abhA
murB divIB ylxW ylxX
sbp pbpX fosB yngC
yoaF yoaG yobJ yozO
sigW rsiW metAA ugtP
recU ponA ypbG rsiX
sigX ypuD ypuA yqjL
yqfB floA nfeDA pssA
ybfM psd ybfO ybfP
ybfQ ybgB sigV rsiV
oatA yrhK cypB bscR
yrhH secDF minD minC
mreD mreC mreB ysxA
ysdB yteJ sppA ythQ
ythP tbcS ytpA yuaI
floT nfeDB yceC yceD
yceE yceF yceG yceH
racX pbpE ycgQ ycgR
yvlD yvlC yvlB yvlA
tagU tagT ywrE rapD
bcrC ywnJ rodA ywbO
efeB relQ dltA dltB
dltC dltD dltE yxlG
yxlF yxlE yxlD yxlC
sigY xpaC yxzE yxjI
yaaN amj ddlA murF
ydbS ydbT pspA ydjO
ydjP yeaA yebC divIC
ltaSA tilS hprT ftsH
coaX hslO
SW 4.3.3 Acid stress proteins (controlled by YvrI-YvrHa)
rsoA sigO yvrJ oxdC
rsiO
SW 4.3.4 Heat shock proteins
ctsR mcsA mcsB clpC
radA disA htrA sigI
rsgI clpE mreBH mtaB
rsmE prmA dnaJ dnaK
grpE hrcA htrB cssR
cssS clpP bcrC htpG
groES groEL ftsH
SW 4.3.5 Cold stress proteins
cspB bipA desE desK
desR silP cspD ytrF
ytrE ytrD ytrC ytrB
ytrA cshA cspC ydjO
SW 4.3.6 Coping with hyper-osmotic stress
proA ktrD papB ktrC
proJ proH yocM papA
opuD gbsB gbsA gbsR
ktrA ktrB opuAA opuAB
opuAC opuBD opuBC opuBB
opuBA opuCD opuCC opuCB
opuCA opcR opuE
SW 4.3.7 Coping with hypo-osmotic stress
mscY mscT spoVAC mscL
mscC
SW 4.3.8 Resistance against oxidative and electrophile stress
bstA yfhE csbB perR
katA akrN yitT yjbC
spxA yjgD mhqA ohrA
ohrR ohrB guaN mhqR
ykuV bshC ylxP ymaD
azoJ sqhC sodF sodC
bshBB arxR noxC yodD
yodE msrB msrA brxA
bsaA bshA bshBA ypdA
cypC yqjM yqjL brxB
yqhB mgsR sodA adhR
adhA sufL trxA tpx
ytpQ dps yugU glxB
mrgA liaR liaS liaF
liaG liaH liaI pgoN
azoRB rnr catR trxB
csbA hpf hxlB hxlA
hxlR clsC nfrAA efeB
glxA aag katX aldY
yxjJ yxiS katE csbC
ahpC ahpF hypR ydaG
sufLC ydfN ydfO ydfP
ydhK tsaE yerD yflA
yfkS hypO sufLB yfkJ
yfkI rbn catD catE
SW 4.3.9 Resistance against oxidative and electrophile stress/ based on similarity
bcp xpdC ydbD ydhUc
SW 4.4 Lifestyles/ miscellaneous
exlX yplQ ytjA
SW 5 Prophages and mobile genetic elements
xlyB yjqA pghB xpdC
xkdA xre yjzJ xkdB
xkdC ykzK xkdD xtrA
xpf xtmA xtmB xkdE
xkdF xkdG ykzL xkdH
xkdI xkdJ ykzM xkdK
xkdM xkdN xkzB xkdO
xkdP xkdQ xkdR xkdS
xkdT xkdU xkzA xkdV
xkdW xkdX xepA xhlA
xhlB xlyA sprB yotM
yotL yotK yotJ yotI
yotH yotG yotF yotE
yotD yotC yotB sspC
yosX yosW yosV yojW
yosU yosT dutB yosR
nrdFB yosQ nrdEB nrdEB
nrdIB yosL yosK yosJ
yosI yosH yosG yosF
yosE yosD yosC yosB
yosA yorZ yorY yorX
yorW yorV mtbP yorT
yorS yorR yorQ yorP
yorO yorN yorM dpoL
yorK yorJ yorI yorH
yorG yorF yorE yorD
yorC yorB yorA pghZ
yoqY yoqX yoqW yoqV
yoqU yoqT yoqS yoqR
yoqP yoqO yoqN yoqM
yoqL yoqK yoqJ yoqI
yoqH yoqG yoqF yoqE
yoqD yoqC yoqB yoqA
yopZ yopY yopX yopW
yopV yopU yopT yopS
yopR yopQ yopP yopO
yopN yopM aimP aimR
yopJ yopI sieB yopG
yopF yopE yoyH yoyI
yopD yopC yopB yopA
yonX yonV yonU yoyJ
spbT yonS yonR yonP
yonO hupN yonK yonJ
yonI yonH yonG yonF
yonE yonD yonC yonB
yonA yomZ alkA yomY
yomX yomW yomV yomU
youA yomT yomS yomR
yomQ adaA yomP yomO
yomN yomM yozP yomL
youB yomK yomJ cwlP
adaB yomH yomG yomF
yomE yomD blyA bhlA
bhlB bdbB sunS bdbA
sunT sunA sunI uvrX
yolD yolC yolB yolA
ndhF yokL yokK yokJ
yokI yokH yoyK ybcC
yoyK yokG nukF yokE
aacD yokC ybcF yokB
sprA ybcH ybcI ybzH
ybcL ybcM skfA skfB
skfC skfE skfF skfG
skfH spoIVCA arsC arsB
yqcK arsR yqcI rapE
phrE yqzI rttG rttF
yqxJ yqxI cwlA yqxH
yqxG yqcE yqcD yqcC
yqcB yqcA yqbT yqbS
yqbR yqbQ yqbP yqbO
yqbNc yqbNn txpA yqbM
yqbK yqzN yqbJ yqbI
yqbH yqbG yqbF yqbE
yqbD yqbC yqbB yqbA
yqaT yqaS yqaR yqaQ
yqaP yqaO yqaN yqzO
sknM yqaL yqaK yqaJ
yqaI sknH yqaG yqdA
yqaF sknR yqaD yqaC
yqaB yueB ydcL immA
immR xis ydzL ydcO
helP conQ nicK ydcS
ydcT yddA conB conC
conD conE yddF conG
cwlT yddI yddJ yddK
rapI phrI yddM ydzTc
ydzT ydzT ydzT ydzTn
ydiM ydzU ydzV bsuMA
bsuMB ydzWc ydzWmc ydzWmb
ydzW ydzW ydzWma ydzWn
bsuRA bsuRB bsuRC ydjB
ydjC yerB pcrA
SW 5.1 Prophages
xlyB yjqA pghB xpdC
xkdA xre yjzJ xkdB
xkdC ykzK xkdD xtrA
xpf xtmA xtmB xkdE
xkdF xkdG ykzL xkdH
xkdI xkdJ ykzM xkdK
xkdM xkdN xkzB xkdO
xkdP xkdQ xkdR xkdS
xkdT xkdU xkzA xkdV
xkdW xkdX xepA xhlA
xhlB xlyA sprB yotM
yotL yotK yotJ yotI
yotH yotG yotF yotE
yotD yotC yotB sspC
yosX yosW yosV yojW
yosU yosT dutB yosR
nrdFB yosQ nrdEB nrdEB
nrdIB yosL yosK yosJ
yosI yosH yosG yosF
yosE yosD yosC yosB
yosA yorZ yorY yorX
yorW yorV mtbP yorT
yorS yorR yorQ yorP
yorO yorN yorM dpoL
yorK yorJ yorI yorH
yorG yorF yorE yorD
yorC yorB yorA pghZ
yoqY yoqX yoqW yoqV
yoqU yoqT yoqS yoqR
yoqP yoqO yoqN yoqM
yoqL yoqK yoqJ yoqI
yoqH yoqG yoqF yoqE
yoqD yoqC yoqB yoqA
yopZ yopY yopX yopW
yopV yopU yopT yopS
yopR yopQ yopP yopO
yopN yopM aimP aimR
yopJ yopI sieB yopG
yopF yopE yoyH yoyI
yopD yopC yopB yopA
yonX yonV yonU yoyJ
spbT yonS yonR yonP
yonO hupN yonK yonJ
yonI yonH yonG yonF
yonE yonD yonC yonB
yonA yomZ alkA yomY
yomX yomW yomV yomU
youA yomT yomS yomR
yomQ adaA yomP yomO
yomN yomM yozP yomL
youB yomK yomJ cwlP
adaB yomH yomG yomF
yomE yomD blyA bhlA
bhlB bdbB sunS bdbA
sunT sunA sunI uvrX
yolD yolC yolB yolA
ndhF yokL yokK yokJ
yokI yokH yoyK ybcC
yoyK yokG nukF yokE
aacD yokC ybcF yokB
sprA ybcH ybcI ybzH
ybcL ybcM skfA skfB
skfC skfE skfF skfG
skfH spoIVCA arsC arsB
yqcK arsR yqcI rapE
phrE yqzI rttG rttF
yqxJ yqxI cwlA yqxH
yqxG yqcE yqcD yqcC
yqcB yqcA yqbT yqbS
yqbR yqbQ yqbP yqbO
yqbNc yqbNn txpA yqbM
yqbK yqzN yqbJ yqbI
yqbH yqbG yqbF yqbE
yqbD yqbC yqbB yqbA
yqaT yqaS yqaR yqaQ
yqaP yqaO yqaN yqzO
sknM yqaL yqaK yqaJ
yqaI sknH yqaG yqdA
yqaF sknR yqaD yqaC
yqaB yueB ydzTc ydzT
ydzT ydzT ydzTn ydiM
ydzU ydzV bsuMA bsuMB
ydzWc ydzWmc ydzWmb ydzW
ydzW ydzWma ydzWn bsuRA
bsuRB bsuRC ydjB ydjC
SW 5.1.1 PBSX prophage
xlyB yjqA pghB xpdC
xkdA xre yjzJ xkdB
xkdC ykzK xkdD xtrA
xpf xtmA xtmB xkdE
xkdF xkdG ykzL xkdH
xkdI xkdJ ykzM xkdK
xkdM xkdN xkzB xkdO
xkdP xkdQ xkdR xkdS
xkdT xkdU xkzA xkdV
xkdW xkdX xepA xhlA
xhlB xlyA
SW 5.1.2 SP-beta prophage
sprB yotM yotL yotK
yotJ yotI yotH yotG
yotF yotE yotD yotC
yotB sspC yosX yosW
yosV yojW yosU yosT
dutB yosR nrdFB yosQ
nrdEB nrdEB nrdIB yosL
yosK yosJ yosI yosH
yosG yosF yosE yosD
yosC yosB yosA yorZ
yorY yorX yorW yorV
mtbP yorT yorS yorR
yorQ yorP yorO yorN
yorM dpoL yorK yorJ
yorI yorH yorG yorF
yorE yorD yorC yorB
yorA pghZ yoqY yoqX
yoqW yoqV yoqU yoqT
yoqS yoqR yoqP yoqO
yoqN yoqM yoqL yoqK
yoqJ yoqI yoqH yoqG
yoqF yoqE yoqD yoqC
yoqB yoqA yopZ yopY
yopX yopW yopV yopU
yopT yopS yopR yopQ
yopP yopO yopN yopM
aimP aimR yopJ yopI
sieB yopG yopF yopE
yoyH yoyI yopD yopC
yopB yopA yonX yonV
yonU yoyJ spbT yonS
yonR yonP yonO hupN
yonK yonJ yonI yonH
yonG yonF yonE yonD
yonC yonB yonA yomZ
yomY yomX yomW yomV
yomU youA yomT yomS
yomR yomQ yomP yomO
yomN yomM yozP yomL
youB yomK yomJ cwlP
yomH yomG yomF yomE
yomD blyA bhlA bhlB
bdbB sunS bdbA sunT
sunA sunI uvrX yolD
yolC yolB yolA yokL
yokK yokJ yokI yokH
yoyK yoyK yokG nukF
yokE aacD yokC yokB
sprA
SW 5.1.3 Skin element
spoIVCA arsC arsB yqcK
arsR yqcI rapE phrE
yqzI rttG rttF yqxJ
yqxI cwlA yqxH yqxG
yqcE yqcD yqcC yqcB
yqcA yqbT yqbS yqbR
yqbQ yqbP yqbO yqbNc
yqbNn txpA yqbM yqbK
yqzN yqbJ yqbI yqbH
yqbG yqbF yqbE yqbD
yqbC yqbB yqbA yqaT
yqaS yqaR yqaQ yqaP
yqaO yqaN yqzO sknM
yqaL yqaK yqaJ yqaI
sknH yqaG yqdA yqaF
sknR yqaD yqaC yqaB
SW 5.1.4 Prophage 1
alkA adaA adaB ndhF
ybcC ybcF ybcH ybcI
ybzH ybcL ybcM skfA
skfB skfC skfE skfF
skfG skfH
SW 5.1.5 Prophage 3
ydzTc ydzT ydzT ydzT
ydzTn ydiM ydzU ydzV
bsuMA bsuMB ydzWc ydzWmc
ydzWmb ydzW ydzW ydzWma
ydzWn bsuRA bsuRB bsuRC
ydjB ydjC
SW 5.1.6 Phage-related functions
xlyB yueB
SW 5.2 Mobile genetic elements
ydcL immA immR xis
ydzL ydcO helP conQ
nicK ydcS ydcT yddA
conB conC conD conE
yddF conG cwlT yddI
yddJ yddK rapI phrI
yddM yerB pcrA
SW 5.2.1 ICEBs1
ydcL immA immR xis
ydzL ydcO helP conQ
nicK ydcS ydcT yddA
conB conC conD conE
yddF conG cwlT yddI
yddJ yddK rapI phrI
yddM
SW 5.2.2 Additional genes
yerB pcrA
SW 6 Groups of genes
gyrA linK bifL bifM
bifN estB icaC yfiS
yfiU mprF sxzY sxzZ
sxzA yfhB yfhC yfhH
yfhI yfhJ spdL folP
ephM csbB yfhO yfhP
ygaB ygaC folB ygaD
ygaE ygzB ygxA folK
ygzA ygzC ygaJ thiC
ygaK katA ssuB ssuA
ssuC ygaN ygaO yhzB
lysS yhbD yhbJ yhcA
yhcB yhcC yhcD yhcE
yhcG yhcH yhcI yhcJ
dgcK tcyP yhcN mncR
srtA yhcU glpW yhcX
yhzG yhxA glpF glpK
pgcA yhcY yhcZ azr
phoA citA yhdF bcaP
yhdH yhdJ asiMB asiMA
plsC yhdP yhdR yhdT
crcBA crcBB yhdX mscY
yheN nhaC bmrC bmrD
yheG sspB yheE spaD
spaC yheB yheA khtU
khtT khtS yhaR yhzD
yhaQ yhaP yhaL prsA
yhaJ yhaI scoC yhaH
yhzF trpP ecsA ecsB
ecsC sndC yhfA yhgB
pbpF hemY yhgE yhfC
yhfE yhfF gltT yhfH
yhfI yhfK aprE yhfO
yhfP yhfQ yhfS yhfT
bioY yhxC yhzC ctsR
comK yhxD yhjA yhjC
yhjD yhjE sipV yhjG
mcsA glcP yhjN yhjO
yhjP clpC mblK yisL
wprA yizA yisQ yisU
yisX yisY yitE yitF
yitG yitH yitI samT
yitK yitL yitM yitO
yitP ispD yitQ yitR
nprB yitT yizC yitV
ispF yitY yitZ yjzC
gltX yjzD yjaU fabF
appD appF appAn appAc
appB appC trpS oppA
oppB oppC oppD oppF
yjbB yjbE cysS cwlQ
yjbK yjbL ppnKA kefQ
thiG yjcA yjzK yjzE
yjcF yjcG yjcH yjcL
yjcM yjcN yjzF yjzG
yjcO yjcP yjcQ yjcR
yjcS yjdA secE yjdB
manR manP yjdF yjdG
yjzH yjdJ ctaO yjfA
yjfB yjfC yjgA rplK
yjhA yjiA yjzI yjjA
yjkA yjkB yjlA yjlB
yjlC ndh exuM exuT
yjnA yjoA rplJ phrA
yjpA xlyB yjqA xre
rplL xkdG rlmG xkdJ
xkdK xkdM rpoB rpoC
xepA xhlA xhlB xlyA
spoIISA pitB ykaA steT
ykcB ykcC htrA dppA
dppB dppC rpsL dppD
dppE ykfD ykhA rpsG
ykjA ykkA ykkB gdnC
gdnD fusA ykzN metE
rsbRB tufA thiX thiW
thiV thiU ykoG ykoH
ykoI ykoJ ybaC mgtE
ykzB ykoL ykoM ykoS
ykoT dgcW ykoX ykoY
rsgI rpsJ htpX ktrD
ykzP ykrP mtnA rplC
mtnK ykvA rplD eag
kinD motB motA ykvI
rplW ykvO ykzQ ykvQ
ykzR rplB ykvR ykvS
ykzS ykvU stoA pfeT
rpsS glcT ptsG ptsH
ptsI ykwB rplV mcpC
ohaC ykwD pbpH kinA
dapX ykzT cheV kre
rpsC ykuC ppeE ykzU
ykuH ykuI ykuJ rplP
ykuK ykuL ykuO dapH
dapI mscT rpsQ yknU
yknV skiW skiX skiY
skiZ fruA rplNA sipT
ykoA panE mreBH kinC
rplX ykqA ktrC rnjA
ykrA ykzV ykyA rplE
pdhB pdhC pdhD slp
rgpA yktA yktB rpsNA
suhB ykzC yktD nprE
ylaA ylaB sigQ ylaE
rpsH ylaF ylaH ylaI
ylaJ ylaK ylaL ylaN
ftsW rplF pycA ctaA
ctaB ctaC ctaD ctaE
ctaF ctaG ylbA ylbB
rplR ylbG coaD spoVV
rpsE ylbK ylbL ylzH
ylbN gerR ylbP rpmD
mraZ rsmH ftsL pbpB
spoVD murE mraY murD
spoVE guaB murG murB
divIB ylxX sbp ftsA
ftsZ bpr secY spoIIGA
sigE ylmE adk sepF
ylmG ylmH divIVA ileS
lspA pyrP pyrB pyrAB
ybzG cysP infA tcaB
yloC gmk coaBC priA
fmt prkC rsgA spoVM
rpsM yloU yloV plsX
fabD fabG acpA rpsK
rnc smc ftsY ylqB
ffh rpsP ylqC ylqD
rpoA trmD rplS rbgA
ylqG sucC sucD rplQ
topA codY flgB flgC
fliF ecfA fliG fliJ
ylxF flgE fliL ecfAB
fliM fliY cheY fliZ
fliP fliQ fliR flhB
flhA flhF ecfT cheB
cheA swrB rpsB truA
tsf pyrH frr uppS
cdsA dxr rasP proS
polC nusA rulR infB
ribC rpsO ylxY asd
dapG rplM dapA spoIIIE
bcbE ymfF ymfH rpsI
ymfKn ymfKc rodZ pgsA
cinA recA pbpX rny
ybaJ dacA ymzD ymcC
ymaE ymzEn ymzEc pghC
ebrB ebrA gerD ymzC
ymzA nrdI nrdE nrdF
ymaB kbaA hflX ynbB
glnA ynxB ynzF ynzG
ynaB ynaC ynaE ynaF
ynaG ynzI ynaI xynP
yncB yncC alrB ynzJ
yncM ynzK tatAC flvS
yndD yndE yndF yndG
yndH yndJ yndK pghL
pdxS ynzC tktA yneF
ccdA yneI yneJ yneK
yneN yneP yneQ yneR
plsY yneT parE parC
ynfCn alsT eglS ynfE
xynC xynD yngA yngC
yngL dacC yoeA iseA
yoeC yoeD ggt yogA
gltA yoxD yoaA yoaB
yoaC yoaF yozQ yoaH
yoaI exlX yoaK pelB
yozS yoaO yoaP yoaS
yozG yoaT yoaW yoaZ
ybaR penP yobA yozU
yobB xynA yozV yozH
ybaS yozI yobF yozW
yozX yozJ yozY yozZ
phrK yozM yobI yoyA
S717_BsrG feuC rttM yobM
yobN yobO feuB yobR
yobT yobU yobV yobW
yocA yozB yocB feuA
yocC desE desK desR
walL bsrB_6S_ssrSA yozC dhaS
sodF yocR yocS odhB
odhA yojO mdtK rsbRC
yojF yoyC yojE yojA
yodA yoyD yodF murP
ctpA yodI pgpB kamA
kamB yodQ yodR yodS
yodT murQ phyC ybbJ
yotH yotF ybbK yotD
yotC nrdFB nrdIB yorK
yoqS yoqN rsiW cdaA
yopX glmM sieB yopG
yopD yopC yopA yonX
spbT yonS glmS yonR
yonJ yomQ serS yomL
youB yomK cwlP blyA
bdbB bdbA sunT sunA
sunI yolB yolA ndhF
S810_asrG yokH yoyK ybcC
yoyK nukF ybcF yokB
spsMc dinF ypmT ypmS
ypmR ybcH scuA ypmP
yplQ ypkP dfrA thyB
ypjQ ypjP ybcI rsmJ
ypgR ugtP queP ybcL
ypzF ypbS dynA pbuX
ybcM kdgT rnpB_RNaseP-bact-b_rnpB gpsB
ypsA ypqE yppF yppE
ponA ypoC dnaD tseB
ypmA skfE birA cca
dapB ypjD ypjC skfF
ypjB ypjA qcrC qcrB
qcrA ypiF ypiB ypiA
aroA skfG skfH aroF
ndk folEA hbs ybdG
yphF yphE der yphA
ypzI ybdJ rpfA cmk
sleC sleB prsW gudB
ybdK ypbF ypbE ypbD
recS gmmB fmnP ybzI
ypzE serA rsiX sigX
resE resD resC ybdM
resB resA spmA dacB
ypuI scpA ypuF ybdN
ypzK sipS ypzC ybdO
ypzJ ypuC ypuC ypuB
ybxG spoVAF spoVAD spoVAC
spoVAB spoVAA spoIIAA dacF
pupG deoB yqzK yqkK
mleN yqkF yqkE yqkD
yqkC ybxI yqkB yqkA
yqjZ yqjY yqzH yqjV
yqjU yqjU yqjT dsdA
yqjQ yqjP yqjN S903
rnz gndA mifM oxaAB
yqjF ybeC yqjE yqjD
yqjA artR artQ artP
glpQA bmr bkdAB glpT
yqzF yqiH yqiG spo0A
dxs accC accB ybeF
spoIIIAH spoIIIAG spoIIIAF spoIIIAE
spoIIIAD spoIIIAC spoIIIAB spoIIIAA
yqhV ybfA yqhS yqhR
yqhQ yqhP yqhO yqhL
ybfB tasA sipW tapA
ybfEc yqzG comGG comGF
comGE comGD comGC comGB
comGA yqxL yqhB rsbRD
yqgY yqgX yqgW yqgV
yqgU yqgT ybfF yqgQ
glpG folN rpmGA yqgM
yqgL ybfG yqzD yqzC
pstBA pstA pstC pstS
pbpA yqgE sodA ybfH
yqgC yqgB yqgA ispG
yqfW zur yqfU yqfT
ispH yqfO trmK cccA
sigA dnaG antE yqxD
glyS glyQ yqzL mpr
era unpK rnrY pgpH
phoH yqfB floA nfeDA
yqeY yqeW dnaK hrcA
lepA spoIIP holA pssA
yqzM comEC comEA yqeM
yqeK nadD yaaI ybfM
rgpH yqeG yqeF cwlH
psd yqeD yqeC yqeB
nucB yqcK ybfN phrE
rttF yqxI ybfO yqxG
yqbO yqbNc yqbNn txpA
ratA_ratA S977 yqbM gltP
yqbB yqbA gamP sknR
yqaD yqaC yrkS psiE
yrkQ yrkP yrkO yrkN
ybgB yrkK yrkJ yrkI
yrkH yrkF yrkE yrkD
yrzM yrkB blt yrkA
yrzO yrdR ybgF czcD
yrdN yrdK brnQ azlD
azlC yrdF yrdDc yrdDm
yrdDn yrdC yrdB yrdA
yrpB glnT yrpD zinT
yrpG yraO prpF csn
yraL yraK yraJ yraI
yraH glnJ adhB yrzP
sacC glnL levG levF
levE levD levR yrhP
yrhO rsiV oatA yrhK
S1022_ncr1175_surF cypB yrhH yrzI
yrhG yrhF yrhE yrhD
yrhC mccB scr_Bacteria-large-SRP_scr gudP
yrrT pbpI yrrO yrrN
yrrL yrzB yrzL alaS
yrrI glnQ glnH glnM
glnP yrzQ yrzR yrrB
mnmA iscSA bsrA_6S_ssrSB aspS
hisS apt recJ yrvD
yrvC secDF spoVB yrbG
yrbF tgt yrzS csbX
yrbE yrzF S1052 yrzH
yrzH yrzT yrbC nadB
obgE spo0B ycbK rpmA
rppA rplU spoIVFB spoIVFA
minD minC mreD mreC
ycbL mreB ysxA comC
folC valS yszA dnaX
ycbM hemB ysxD engB
lonB tig leuC leuB
leuA ilvC ycbO ilvB
ysnE ysnF ysnB rdgB
rcmE ysmA sdhB sdhA
sdhC yslB ycbP trxA
fadB yshE yshB zapA
pheT pheS glcD glcF
ysfE yczK cstA araQ
araP araN egsA araL
phoD abnA ysdB ysdA
rplT infC yscB pftB
tatAD pftA lytT lytS
ytxB dnaI dnaB ebfC
tatCD ytbD ytbE coaE
spcF phoR phoP mdh
icd citZ ytvI ytzA
pyk pfkA ycbU accA
accD dnaEC ytrI ytzJ
lmrB ytpI ytnM sndA
ribR tcyN tcyM tcyL
tcyK tcyJ ytkK ytzD
ytzD argG yteJ sppA
estA ytcJ ytcI sspA
braB ezrA yczC msrC
rpsD tyrS ytzK yccF
acuB motS motP aroX
brxJ ytxH ytxG natK
murC ytoQ ytoP ytzB
natR ytnP ytmP ytlR
ytlQ ytlP ytkP ytjP
natA ythQ ythP murJ
ytfP opuD natB rmgU
rmgS rmgP rmgR ytcQ
ytcP ytbQ ytaP msmE
msmF msmG ycdA melA
ytwF leuS ytvB yttB
yttA bceB bceA bceS
bceR ytrF ytrE ytrD
ytrC ytrB ytqA ytqB
ytpA ytnA metK ycdB
ytmB ytmA ytlA ytlC
ytlD ytkC ytzI ycdC
ytkA ytiB rpmEB ythA
ythB mntD mntC cwlK
mntB mntA menC menE
menB menD yaaL ytdA
ytcA ytcB ytcC glgP
ycdF ycdG znuA znuC
thiT floT nfeDB yuaE
yuaD znuB bslA ktrA
ktrB yubF yubD cdoA
yceB uppP yubA tlpB
mcpA tlpA mcpB yuzH
yugS yugP yceD yuzI
mstX kbfO yugN yugM
pgi bdhK bdhJ yceE
yugI yugH yugG yugF
yugE kinB kapB bofA
yceF yuxJ pbpD yuxK
yufK maeL maeM nupN
nupO nupP nupQ maeN
yufS mrpA mrpB mrpC
mrpD mrpE mrpF mrpG
yuxO comA comP comQ
pncB niaP yueI yueH
yueF yueE bznD yueC
yueB yukAB yukC yukE
adeR yceJ yukJ mbtH
dhbF dhbC besA yuiH
bioYB hisP pepA yuiD
yuiB yuiA trxBB opuAA
yuzG dapF yutK yuzB
opuAB yuzD yutI yuxL
cotNH nucF opuAC yutE
yutD fisB yunD yunE
yunF amhX yunG pucJ
pucK yuzJ ycgA bsnA
frlP ycgB frlM frlN
frlO frlB yurQ dadA
amyE sufB sufU sufS
sufD sufC yuzK lctE
metQ metP metN yusD
yusF yusG lctP fadE
mdtP yusQ mdr yusR
yusS yusU feuV yusYc
yusYn yusZ htrB cssR
cssS yuxN yvzF gerAA
gerAB gerAC ycgF liaR
liaS liaF liaI yvqJ
yvqK yvrA yvrB yvrC
yvrD yvrE yvrG yvrH
oxdC ycgH rsiO yvrN
yvrO yvrP fhuC fhuG
fhuB fhuD lysP yvsG
ltaSP modA modB yvgO
nhaK nadE yvgT bdbC
bdbD cadA copA csoR
tmrB yvaD yvaE yvaG
ssrA_tmRNA_ssrA estA secG yvaM
yvaQ opuBD aroK opuBC
opuBB opuBA sdpB sdpI
ycgJ opuCD opuCC opuCB
opuCA yvbG yvbH yvbI
yvbJ yvbK eno pgm
tpiA pgk gapA araE
yvbT cyeB yvbW yvbX
lutC lutB yvfU yvfT
yvfS yvfR ganB ganA
ganQ ganP ganS dnaA
lutP yvfG epsL epsK
epsG epsE epsC epsB
epsA putP pnbA yveG
yveF pbpE sacB levB
aspP psmA psmB yvdQ
clpP mdxJ mdxG mdxF
mdxE mdxD yvdD yvdC
ycgQ yvdB yvdA yvcT
psdB psdA psdS psdR
yvzJ yvcN crh ycgR
mgfK trxB cwlO yvcD
bmrA ycgS yvzA yvcB
yvcA yvpB pelC hprF
ppaX yvoD lgt yvnA
pchE yvlA yvkN csbA
yvkC yvkA minJ swrAAc
swrAAn ftsX ftsE cccB
yvjA prfB secA hpf
fliD hag yviE flgK
flgN flgM comFC comFA
nasA degU degS yvyE
tagV tagO tuaF tuaE
tuaD tuaB tuaAc tuaAn
lytB yciB lytA tagU
mnaA gtaB yvzH ggaB
ggaA yvzI yczL yvzE
tagH tagG tagF tagE
tagD tagA tagB zinU
lytD gerBA gerBB gerBC
ywtG tagT pgdS edmS
yckA rbsD rbsA rbsC
rbsB yckB ywsA alsD
ywrK ywrJ cotB NA
ywrF ywrE hpxW chrB
chrA ywqO ywqN yckC
ywqG uglF ptkA tkmA
ywzD ywqB ywpJ ssbB
ywpG ywpF ywpE ywpD
mscL fabZ flhP flhO
mbl nin ywoG ywoF
pucI ywoD ywoB amtB
glnK bcrC nucA ywnJ
spoIIQ ywnG ywnF clsA
ywnC ywnB tlpC ywnA
ywzE ywzF ywmF fdhD
ywmE ywmD ywmC spoIID
murAA ywzB atpC atpD
atpG atpA atpH atpF
atpE atpB atpI glyA
mntP ywlA ywkF prfA
ywkD ywkB srfAA tal
fbaA spo0F ywjG pyrG
srfAB fadF clsB ywjB
ywjA comS clsC narI
narH narG ywiC narK
argS srfAC ywiB albB
albC albD albF albG
ywhL ywhK phrF ywhH
pbpG ywhD srfT ywhC
hmtB mmr ywgB ycxB
ywgA ywfO ywzC ywfM
pta hemQ ycxC bacE
ywfA rocC rocA bslB
spsG sfpAc ywdK ywdJ
ywdI ywdH sfpAn ywdF
ywdE ywdD ywdA sacP
nirC sacT yczE ywcI
vpr ywcH rodA ywcE
qoxD qoxC qoxB qoxA
tcyC ywcD vbfB vbfA
efeB tcyB efeM efeU
cidA cidB ywbF ywbE
tcyA ywbA epr sacX
sacY ywaF tyrZ eapD
menA ywzH dltB dltD
licA licC licB licR
yxlH yxlG yxlF yxlC
yxlA xpaC cydD cydC
cydB cydA cimH yxkI
yxkH msmX yxkF aldY
gdnE yxkC yxkA yxjN
yclE yxjM yxjL yxjJ
dtpT yxjF yxjC nupG
yxiTc yclG yxiTn citH
bglS licT yxiP yxiO
yxiM yczF yxzI yxzJ
yxiK yxiJ yxiI yxzG
yxiH yxiG yxzC yxiF
gerKA wapI wapA yxxF
yxiE bglP yxxE rtbE
gerKC yxiC yxiB abnB
yxzL hutM gerKB nupC
yxxB yxeR yxeQ yxeO
yxeN yclH yxeM yxeJ
hadM yxeG yxeF yclI
yxeC frxB yxeA tpeM
tpeL tpeK tpeJ yclJ
iolF iolE yclK yxcE
yxcD csbC yxcA yxbG
aldX yxbD yxbC yxbB
yxbA yxnB yxaM yxaL
yxaJ yxaI yxaH phrC
yxnA yxzK yxaC yxaB
glxK gntP ahpC ahpF
ptsJ yyzN liaM liaL
liaK liaD yydD yydC
yydB yyzF yycS yycR
yyzG yycQ yycN phrG
pbtN argI rocE yyzO
htrC walI walH pbtO
walK walR purA yycE
dnaC yaaO pbtP yycC
yycB yycA gdpP yybS
yyzH pbtQ ppaC yybP
yybO yyzI yyzJ yyzK
ycnB yyzL yybN yybM
yybL yybK yybJ yybH
yybG yybF yybD yybC
yybB yyaT yyaS yyaQ
yyaP tetB yyaO yyaN
yyaM yyaK yyaJ yyaH
ycnE rpsR ssbA engD
yyzM parA yyaB nocA
mnmE oxaAA rnpA tmk
glcU cutI cutJ ycnL
mtlA mtlF ycsA darA
sipU yczH yczO pxpG
pxpI dnaN yaaR yczI
yczJ pbpC ycsN mtlR
ydaB ydaC ydaD holB
ydaF amj ydzA epsJ
ydaL ydaM kimA poxB
dnaH ydzK mntH ydbA
ydbB ydbC trmNF dctS
dctR dctP ydbI ydbJ
ydbK ydbL ydbM yazA
fbpB ydbO ddlA murF
cshA ydbS ydbT acpS
ydcC alrA rsbRA rsbS
abrB rsbV ydcF ydcG
tex ydcK metS ydzL
ydcO conQ ydcS ydcT
yddA conB conC conD
conE yddF dayD conG
yddI yddJ yddK phrI
yddM yddN yddQ yddR
yddS ydzM yddT ydzN
ydzE ydeD ydeG ydeH
ydeI ydeJ ydeK ydeM
ydeN ydzF ydeO prtG
ydeR ydzO ydzSn ydzSc
ydfB ydfC ydfE ydfG
ydzP ydzQ ydfH ydfI
ydfJ ydfK mneP ydzH
ydzR ydfR ydfS ydgB
ydgD ydgF ispE ydgH
ydgI ydgK ydhB ydhF
phoB ydhH ydhI ydhJ
pbuE gmuB gmuA gmuC
gmuG ydhUc ydhUn spoVG
tsaB glmU tsaD tatAY
tatCY ydiK ydiL groES
prs groEL ydzTc ydzT
ydzT ydzT ydzTn ydiM
ydzU ydzV bsuMA bsuMB
ydzWc ydzWmc ydzWmb ydzW
ydzW ydzWma ydzWn pth
ydjB ydjC ydjG ydjH
ydjI ydjJ iolT bdhA
walM ydjN ydzJ ydjO
ydjP cotA gabP ydzX
mneS yeaC yeaD yebA
pbuG yebC yebD yebE
yebG yabM purL yabN
yecA yezF yerA yerB
yerD pcrA ligA yerH
yerI sapB opuE gatC
spcP gatA gatB srfP
yeeB spcQ yeeC yeeD
yezA yezG yeeG phrH
yeeI divIC yesE yesF
yesK yesL yesM yabR
yesN yesO rhgP rhgQ
rhgR yesU lplA lplB
lplC yetF yetH yetI
yetI yezD calJ yetK
yetN spoIIE ltaSA spmH
spmG yfnC gyrB pynN
mtrA vdhT yfmQ copO
yfmN yfmJ yfmI yfmG
fecF fecE fecD prkT
fecC yfmB pelA maeS
citS citT yflP citM
tilS acyP yflI nagP
ltaSB yflD yflB yflA
yfkT yfkS yfkR yfkQ
treP ftsH yfkN yfkL
yfkK rbn yfkF chaA
mscC yfkA yfjT yfjR
yfjQ yfzA yfjM yacD
yfjF yfjE yfjD yfjC
yfjB yfjA malA malP
yfiB yfiC catD yfiG
yfiH yfiI linJ
SW 6.1 Essential genes
gyrA folP folB folK
lysS asiMA plsC prsA
ispD ispF gltX fabF
trpS cysS ppnKA secE
rplJ xre rplL rpoB
rpoC rpsL rpsG fusA
tufA mgtE rpsJ rplC
rplD rplB rpsS rplV
dapX rpsC rplP dapH
dapI rpsQ rplNA rplX
rnjA rplE rpsNA rpsH
ylaN ftsW rplF rplR
coaD rpsE rpmD ftsL
pbpB murE mraY murD
murG murB divIB ftsA
ftsZ secY adk ileS
infA gmk coaBC priA
rpsM plsX fabD fabG
acpA rpsK rnc smc
ftsY ffh rpsP rpoA
trmD rplS rbgA rplQ
topA rpsB tsf pyrH
frr uppS cdsA dxr
proS polC nusA infB
ribC rpsO asd dapG
rplM dapA rpsI pgsA
nrdI nrdE nrdF yneF
plsY parE parC glmM
glmS serS dfrA rnpB_RNaseP-bact-b_rnpB
dnaD birA cca dapB
aroA aroF folEA hbs
der cmk scpA rnz
dxs accC accB ispG
ispH sigA dnaG glyS
glyQ era rnrY holA
nadD yqeG rttF sknR
scr_Bacteria-large-SRP_scr alaS mnmA iscSA
aspS hisS obgE rpmA
rppA rplU mreD mreC
mreB folC valS dnaX
engB rcmE trxA pheT
pheS rplT infC dnaI
dnaB coaE accA accD
dnaEC rpsD tyrS murC
leuS metK menC menE
menB menD mrpA mrpB
mrpC mrpD mrpE mrpF
mrpG pncB trxBB dapF
sufB sufU sufS sufD
sufC nadE aroK eno
pgm gapA dnaA trxB
prfB secA tagO tuaB
mnaA tagH tagG tagF
tagD tagA tagB fabZ
mbl murAA prfA pyrG
argS rodA menA yxlC
wapI rtbE walK walR
dnaC ppaC rpsR ssbA
rnpA tmk dnaN holB
ddlA murF acpS alrA
metS ispE tsaB glmU
tsaD groES prs groEL
bsuMA bsuMB pth pcrA
ligA gatC gatA gatB
yezG divIC gyrB tilS
SW 6.10 Pseudogenes
appAn appAc ymfKn ymfKc
ymzEn ymzEc yoyK yoyK
ypuC ypuC S903 yqbNc
yqbNn yrdDc yrdDm yrdDn
yusYc yusYn swrAAc swrAAn
tuaAc tuaAn yvzH yvzI
yvzE sfpAc sfpAn yxiTc
yxiTn ydzSn ydzSc ydhUc
ydhUn ydzTc ydzT ydzT
ydzT ydzTn ydzV ydzWc
ydzWmc ydzWmb ydzW ydzW
ydzWma ydzWn yetI yetI
SW 6.11 Efp-dependent proteins
yhjG yitG xkdJ dppD
ykwB ctaD ylxX sigE
fmt topA ggt gltA
yodT yonJ yomQ kdgT
yqjN spoIIP ybfO yqbA
recJ valS sndA ytcP
ytcC besA yvdQ mgfK
srfT yyaN ydgB gmuC
cotA yesN
SW 6.12 Secreted proteins
estB sxzY mncR phoA
aprE wprA nprB oppA
yjcM yjfA xlyB xkdG
xkdK xkdM xepA xlyA
htrA nprE pbpB bpr
ylqB flgB flgC flgE
pbpX dacA yncM eglS
xynC xynD dacC ggt
exlX pelB yoaW penP
xynA feuA walL phyC
blyA bdbA yolB yolA
ybdN ybdO dacF ybxI
artP glpQA yqiH tasA
pstS pbpA mpr cwlH
nucB yqxI ybfO yrpD
zinT csn sacC phoD
abnA estA msmE mntA
bslA bsnA amyE metQ
fhuD yvgO ganB sacB
cwlO pelC fliD hag
flgK flgM lytD tagT
pgdS rbsB flhP flhO
ywoF bslB vpr efeB
epr eapD yxkC bglS
wapA abnB frxB yxaL
liaD pbtQ pbpC epsJ
ydhF phoB gmuG walM
ydjN ltaSA fecC pelA
ltaSB yfkN yacD
SW 6.2 Membrane proteins
bifL bifM bifN icaC
yfiS yfiU mprF sxzY
sxzZ sxzA yfhI spdL
csbB yfhO ygaD ygaE
ygzB ssuB ssuA ssuC
ygaO yhbJ yhcA yhcC
yhcE yhcG yhcH yhcI
yhcJ dgcK tcyP yhcN
srtA glpF bcaP yhdH
asiMB asiMA plsC yhdP
yhdT crcBA crcBB mscY
nhaC bmrC bmrD spaD
spaC khtU khtT khtS
yhaR yhaQ yhaP yhaL
prsA yhaJ yhaH yhzF
trpP ecsA ecsB yhfA
pbpF hemY yhgE yhfC
gltT yhfQ bioY sipV
glcP yhjN yhjO yhjP
yisL yisQ yisU yitE
yitG samT yitM yitO
yitP yitQ yitR yitT
yitZ yjzD appD appF
appAn appB appC oppA
oppB oppC oppD oppF
yjbB yjbE cwlQ kefQ
yjcA yjzE yjcP secE
manP yjdJ ctaO yjhA
yjkA yjkB yjlA ndh
exuM exuT yjnA rplL
rpoB rpoC xhlA xhlB
spoIISA pitB steT ykcC
htrA dppB dppC dppD
dppE ykfD ykjA gdnC
gdnD tufA thiX thiW
thiV thiU ykoH ykoI
mgtE ykoS ykoT dgcW
ykoX ykoY rsgI htpX
ktrD ykrP mtnK kinD
motB motA ykvI ykvU
stoA pfeT ptsG mcpC
pbpH ykuC ykuH mscT
yknU yknV skiW skiX
skiY skiZ fruA sipT
ykoA mreBH kinC ktrC
ykyA pdhB pdhC slp
ylaA ylaB sigQ ylaF
ylaH ylaJ ftsW pycA
ctaA ctaB ctaC ctaD
ctaE ctaF ctaG spoVV
ylbL ftsL pbpB spoVD
mraY spoVE murG divIB
ylxX sbp ftsA ftsZ
secY spoIIGA sepF divIVA
lspA pyrP pyrAB cysP
tcaB prkC spoVM plsX
ftsY fliF ecfA fliG
fliJ flgE fliL ecfAB
fliM fliY fliZ fliP
fliQ fliR flhB flhA
flhF ecfT cheA swrB
rpsB cdsA rasP spoIIIE
bcbE rodZ pgsA pbpX
rny dacA ymzD pghC
ebrB ebrA gerD kbaA
ynaG xynP yncC tatAC
yndD yndE yndF yndG
yndJ yndK pghL yneF
ccdA yneJ yneK yneN
plsY ynfCn alsT yngA
yngC yngL yoeA iseA
yoaB yoaF yozQ yoaH
yozG yoaT ybaR ybaS
yobI feuC rttM feuB
yobW yocB feuA desE
desK sodF yocR yocS
odhB mdtK rsbRC yojA
yodF ctpA yodI yoqS
yoqN rsiW cdaA yopX
sieB yopG yopD yopC
yopA yonX yonS yonR
yomK cwlP bdbB sunT
sunA sunI ndhF yokB
spsMc dinF ypmT ypmS
scuA ypmP yplQ ypkP
rsmJ ugtP queP ybcL
dynA pbuX ybcM kdgT
gpsB ponA tseB skfE
ypjC skfF ypjB ypjA
qcrC qcrB qcrA ybdG
yphA sleC sleB prsW
ybdK ypbE ypbD recS
fmnP ypzE serA rsiX
sigX resE resC resB
resA spmA dacB ypuI
sipS ypzC ybxG spoVAF
spoVAD spoVAC spoVAB spoVAA
mleN yqjV yqjU yqjU
yqjT mifM oxaAB ybeC
yqjA artR artQ artP
bmr glpT yqzF ybeF
spoIIIAH spoIIIAG spoIIIAF spoIIIAE
spoIIIAD spoIIIAC spoIIIAB spoIIIAA
yqhV yqhR yqhQ yqhP
yqhO yqhL ybfB sipW
tapA ybfEc yqzG comGG
comGF comGE comGD comGC
comGB comGA yqxL yqhB
rsbRD yqgY yqgU yqgT
ybfF glpG ybfG yqzD
yqzC pstBA pstA pstC
pstS pbpA yqgE ybfH
yqgC yqgB yqgA yqfU
yqfT cccA unpK pgpH
yqfB floA nfeDA yqeW
spoIIP pssA comEC comEA
ybfM psd yqeD yqeB
yqcK yqxG txpA yqbM
gltP yqbB gamP yqaD
yqaC psiE yrkQ yrkO
ybgB yrkK yrkJ blt
yrkA yrdR ybgF czcD
yrdN brnQ azlD azlC
glnT yraO glnJ levG
levF levE yrhP rsiV
oatA yrhK cypB yrhG
yrhF mccB gudP pbpI
yrrI glnQ glnH glnM
glnP mnmA yrvD secDF
spoVB yrbG yrbF tgt
csbX yrbE ycbK spoIVFB
spoIVFA minD minC mreD
mreC mreB comC ycbM
engB lonB leuA ycbO
sdhB sdhA sdhC ycbP
zapA cstA araQ araP
araN ysdB ysdA rplT
pftB tatAD pftA lytT
lytS tatCD ytbD spcF
phoR phoP mdh ytvI
ytzA ytrI lmrB ytnM
tcyN tcyM tcyL tcyK
tcyJ yteJ sppA braB
ezrA yczC motS motP
ytxG natK natA ythQ
ythP murJ opuD natB
rmgP rmgR ytcQ ytcP
msmE msmF msmG ycdA
ytvB yttB yttA bceB
bceA bceS ytrF ytrE
ytrD ytrC ytrB ytnA
ytlA ytlC ytlD ytkC
ythA ythB mntD mntC
cwlK mntB znuA znuC
thiT floT nfeDB znuB
ktrA ktrB yubD uppP
yubA tlpB mcpA tlpA
mcpB yugS yceD mstX
kbfO yugM kinB kapB
bofA yceF yuxJ pbpD
yufK maeL nupN nupO
nupP nupQ maeN yufS
mrpA mrpB mrpC mrpD
mrpE mrpF mrpG comP
comQ niaP yueF yueC
yueB yukAB yukC yceJ
dhbF bioYB hisP opuAA
yuzG yutK opuAB cotNH
opuAC fisB yunE pucJ
pucK ycgA frlP frlM
frlN frlO frlB metQ
metP metN lctP fadE
mdtP mdr feuV htrB
cssS gerAA gerAB gerAC
ycgF liaS liaF liaI
yvqJ yvrA yvrB yvrC
yvrG ycgH rsiO yvrN
yvrO yvrP fhuC fhuG
fhuB lysP yvsG ltaSP
modA modB nhaK yvgT
bdbC bdbD cadA copA
tmrB yvaD yvaE secG
yvaQ opuBD opuBC opuBB
opuBA sdpB sdpI opuCD
opuCC opuCB opuCA yvbG
yvbI yvbJ eno araE
cyeB yvbW yvfT yvfS
yvfR ganQ ganP ganS
lutP epsL epsK epsG
epsE epsC epsA putP
pbpE levB aspP psmA
psmB mdxJ mdxG mdxF
mdxE mdxD ycgQ yvdB
psdB psdA psdS ycgR
bmrA yvcA yvoD lgt
pchE yvlA csbA yvkA
minJ ftsX ftsE cccB
yvjA secA comFA nasA
tagV tagO tuaF tuaE
tuaB tuaAc tuaAn lytB
yciB lytA tagU ggaB
tagH tagG tagF tagB
zinU gerBA gerBB gerBC
ywtG tagT edmS yckA
rbsD rbsA rbsC rbsB
yckB ywrK ywrE chrB
chrA yckC tkmA mscL
mbl nin ywoG pucI
ywoD ywoB amtB glnK
bcrC nucA ywnJ spoIIQ
ywnG ywnF clsA ywnC
tlpC ywmF ywmE spoIID
atpC atpD atpG atpA
atpH atpF atpE atpB
atpI mntP ywlA ywkF
ywkB srfAA srfAB fadF
clsB ywjB ywjA clsC
narI narH narG ywiC
narK srfAC albB albC
albD albG pbpG srfT
ywhC mmr ycxB ywfM
ycxC bacE ywfA rocC
spsG ywdK ywdJ ywdE
ywdD sacP nirC rodA
ywcE qoxD qoxC qoxB
qoxA tcyC ywcD vbfB
vbfA efeB tcyB efeM
efeU cidA cidB ywbF
tcyA ywbA sacX ywaF
menA dltB dltD licC
yxlH yxlG yxlF yxlC
yxlA cydD cydC cydB
cydA cimH yxkH msmX
gdnE yxjN yxjM yxjJ
dtpT yxjC nupG citH
yxiO yczF gerKA yxxF
bglP gerKC hutM gerKB
nupC yxxB yxeR yxeO
yxeN yclH yxeM yxeG
yclI yxeC tpeM tpeL
tpeK iolF yclK yxcE
csbC yxcA yxaM yxaJ
yxaI yxaH yxaC gntP
ahpF liaM liaL liaK
yycQ pbtN rocE htrC
walI walH pbtO walK
pbtP yycB yycA gdpP
pbtQ yybP yybO ycnB
yybL yybK yybJ yybF
yyaP tetB yyaM yyaK
yyaJ parA nocA oxaAA
glcU cutI cutJ ycnL
mtlA sipU pxpG yczI
amj ydaL kimA mntH
dctS dctP ydbI ydbJ
ydbK ydbL ydbO cshA
ydbS ydbT ydcC conQ
conB conC conD conE
conG yddI yddM yddS
ydeD ydeG ydeJ ydeO
prtG ydeR ydfC ydfH
ydfJ mneP ydfR ydfS
ydgD ydgF ydgH ydgK
ydhB ydhH pbuE tatAY
tatCY ydiK ydjG ydjH
ydjJ iolT gabP mneS
yebA pbuG yebC yebE
yabM purL yecA yerB
yerD yerH sapB opuE
spcP srfP spcQ yeeG
divIC yesK yesL yesM
yesO rhgP rhgQ rhgR
lplA lplB lplC yetF
calJ yetK spoIIE yfnC
mtrA yfmQ copO yfmI
fecF fecE fecD prkT
fecC maeS citS citM
yflI nagP ltaSB yflA
yfkT yfkS yfkR yfkQ
treP ftsH yfkL rbn
yfkF chaA mscC yfjQ
yfjF yfjE yfjD malA
malP yfiB yfiC catD
yfiG linJ
SW 6.3 GTP-binding proteins
rsgA rbgA hflX der
era lepA rgpH obgE
engB engD mnmE
SW 6.4 Phosphoproteins
linK sxzY thiC katA
glpK pgcA yhcY yhcZ
sspB yheA scoC yhfK
ctsR comK mcsA clpC
oppA yjbK thiG manR
manP rplK yjoA rpoB
rpoC dppA rpsL rpsG
fusA metE rsbRB tufA
ykoG ykoH ykoM rpsJ
mtnA mtnK kinD rplW
glcT ptsG ptsH ptsI
rplV kinA cheV kre
fruA rplNA kinC pdhB
pdhD rpsNA rpsH ylbN
gerR guaB divIVA pyrB
infA gmk prkC rsgA
rpsM yloV sucC sucD
codY fliY cheY cheB
cheA tsf asd rpsI
recA glnA pdxS tktA
yneI ynfE gltA yoxD
desK desR odhB odhA
rsbRC murP murQ yorK
glmM thyB gpsB ypqE
ypoC ypiF aroF ndk
hbs ybdJ rpfA gudB
ybdK resE resD ybdM
spoIIAA pupG deoB gndA
bkdAB spo0A comGA rsbRD
rpmGA pstS sodA zur
trmK dnaK hrcA yqbO
gamP yrkQ yrkP yrkO
glnJ glnL levE levD
levR iscSA aspS apt
nadB spo0B ycbL ysxA
ycbM hemB tig leuC
leuB ilvC ilvB ysnF
sdhA fadB lytT lytS
coaE phoR phoP mdh
icd citZ pyk pfkA
accD argG sspA aroX
brxJ ytxH natK natR
ytnP melA bceS bceR
rpmEB mntB menB glgP
pgi yceE yugG kinB
maeL maeM comA comP
adeR dhbF dhbC frlP
frlB sufC lctE cssR
cssS liaR liaS yvrG
yvrH oxdC yvrO csoR
eno pgm tpiA pgk
gapA lutC lutB yvfU
yvfT ganA epsE epsB
pnbA clpP psdS psdR
crh mgfK hpf flgN
comFC comFA degU degS
tuaD gtaB ggaA tagE
zinU alsD ywrJ cotB
NA uglF ptkA ywpJ
ssbB ywpD nin atpD
atpA atpH glyA srfAA
tal fbaA spo0F srfAB
srfAC albF pta hemQ
rocA sacP sacT sacX
sacY tyrZ licA licB
licR yxjM yxjL licT
wapI bglP tpeK tpeJ
yclJ iolE yclK ahpC
ahpF ptsJ argI walK
walR purA ycnE ssbA
mtlA mtlF mtlR dnaH
dctS dctR ydcC rsbRA
rsbS abrB rsbV tex
metS ydfH ydfI gmuB
gmuA spoVG groES groEL
bdhA ydjO yerA yerB
gatC yesM yesN yetI
ltaSA gyrB yfmG citS
citT nagP ltaSB treP
yfkK yfjR yfjC malP
linJ
SW 6.4.1 Phosphorylation on an Arg residue
thiC katA yheA scoC
ctsR comK mcsA clpC
rplK rpoB rpoC rpsL
rpsG tufA ykoM mtnA
mtnK rplW rplV kre
rplNA rpsNA rpsH ylbN
divIVA gmk rpsM yloV
fliY rpsI recA pdxS
gltA odhB odhA thyB
ypiF aroF hbs gudB
bkdAB comGA rpmGA hrcA
iscSA apt nadB ysxA
hemB tig leuC leuB
ilvC ilvB fadB mdh
icd pfkA accD argG
aroX ytxH melA rpmEB
mntB menB yceE yugG
frlB oxdC yvrO csoR
gapA lutC lutB yvfU
ganA clpP hpf flgN
comFC comFA gtaB ggaA
zinU ywpJ ssbB nin
atpH srfAA srfAB albF
iolE ahpF purA ssbA
tex groEL bdhA ydjO
yerA gatC yfmG
SW 6.4.2 Phosphorylation on an Asp residue
linK yhcZ ykoG cheV
cheY cheB yneI desR
ybdJ resD spo0A yrkP
glnL ycbL lytT phoP
natR bceR maeM comA
cssR liaR yvrH yvfU
psdR degU spo0F yxjL
tpeJ yclJ walR dctR
ydfI yesN citT
SW 6.4.3 Phosphorylation on a Cys residue
manP ptsG fruA murP
gamP sacP sacX licB
licR bglP mtlA mtlR
gmuB nagP treP malP
SW 6.4.4 Phosphorylation on a His residue
glpK yhcY manR manP
ykoH kinD glcT ptsG
ptsH ptsI kinA fruA
kinC cheA desK ypqE
ybdK resE gamP yrkQ
yrkO glnJ levE levD
levR spo0B ycbM lytS
phoR natK bceS kinB
maeL comP cssS liaS
yvrG yvfT psdS degS
ywpD sacY licA licR
yxjM licT bglP tpeK
yclK ptsJ walK mtlF
dctS ydfH gmuA yesM
citS malP linJ
SW 6.4.5 Phosphorylation on a Ser residue
thiC sspB yjbK manP
fusA rpsJ ptsH ptsI
pdhB gerR pyrB sucC
codY tsf asd recA
rsbRC murQ glmM ypoC
ndk rpfA spoIIAA pupG
trmK yqbO ilvC mdh
citZ pyk sspA aroX
ytnP adeR dhbF dhbC
frlP eno pgm tpiA
pgk pnbA crh degS
tagE ywrJ cotB NA
srfAA tal srfAB srfAC
hemQ licB ahpF argI
ycnE mtlA rsbS abrB
rsbV metS spoVG groES
yerA yetI gyrB yfkK
yfjC
SW 6.4.6 Phosphorylation on a Thr residue
oppA fusA rsbRB prkC
rsgA rsbRC gpsB ndk
hbs ybdM deoB gndA
rsbRD sodA aroX pgi
eno pgk mgfK NA
fbaA tyrZ dnaH ydcC
rsbRA yetI ltaSB
SW 6.4.7 Phosphorylation on a Tyr residue
thiC oppA yjoA fusA
tufA infA asd ynfE
yorK lctE eno epsE
epsB flgN tuaD uglF
ptkA ssbB ahpF ssbA
SW 6.4.8 Phosphorylation on either a Ser, Thr or Tyr residue
sxzY pgcA yhfK thiG
dppA metE tufA pdhD
guaB sucD glnA pdxS
tktA yoxD pstS zur
dnaK aspS tig ysnF
sdhA coaE icd brxJ
glgP sufC gapA gtaB
alsD atpD atpA glyA
pta rocA wapI ahpC
groEL yerB ltaSA yfjR
SW 6.4.9 Phosphoproteins / Other
sacT
SW 6.5 Universally conserved proteins
gltX rplK rpsG rpsJ
rplC rplB rpsS rpsC
rpsQ rplNA rplE rpsH
rplF rplR rpsE secY
rpsM rpsB truA apt
pheS rpsD eno pgk
argS tsaD groES prs
SW 6.6 Poorly characterized/ putative enzymes
ephM ygaK yhcB glpW
yhxA azr citA yhdF
yhdR yheN yhaR sndC
yhfE yhfO yhfP yhfS
yhfT yhxC yhxD yhjG
mblK yisY yitF yitI
yitY yjcG yjdA yjjA
yjlA ykcC ykhA ykkB
ybaC ykoT ykoX ykvO
ykvQ ohaC ppeE panE
ykqA ykrA yktD ylaK
ylbB ylbK rsmH ylmE
ylxY ymfH ynbB ynaI
yncB alrB yneP yngC
yoxD yoaA yoaC yoaI
yobN dhaS yodA kamA
kamB yodQ yodR yodS
yodT yotH yotF yotD
yotC nrdFB nrdIB nukF
ybcF ypjD ypzK yqkF
yqjY dsdA yqjQ yqjN
yqjE yqjD yqhS yqgQ
folN phoH yaaI ybfM
yqeG yqeC yrdN yrdF
yrpB yrpG prpF adhB
yrhH yrrT yrrO yrrN
yrrL yrbE ysnE rdgB
glcD glcF egsA araL
ytbE ycbU ribR ytkK
ytcI ytoP ytlP ytkP
ytjP ytqB ytpA ytiB
ytdA ytcA ytcB ycdF
ycdG cdoA yceB uppP
bdhK bdhJ yugH yugF
yuxO bznD yuiH bioYB
pepA yuxL nucF amhX
dadA yusQ yusR yusS
yusZ yvqK yvrD yvrE
yvaG estA yvaM ycgJ
yvbT yvdD yvdA ycgS
hprF ppaX yvkC ywpJ
fdhD hmtB ywdH ywcH
eapD xpaC aldY yclE
yxjF yxiM yxeQ hadM
yxbG aldX yxbA yxnA
yxaB glxK yycR yycN
yaaO yyaH ycsA ycsN
ydaB ydaD ydaF ydaM
poxB ydbM yddN yddR
ydzF ydgI ydjP yerA
yerD yabR spmH spmG
pynN vdhT yfmJ acyP
yfkA yfjR
SW 6.7 Proteins of unknown function
icaC yfhB yfhC yfhH
yfhJ yfhP ygaB ygaC
ygaE ygzB ygxA ygzA
ygzC ygaJ ygaN ygaO
yhzB yhbD yhbJ yhcC
yhcD yhcU yhcX yhzG
yhdJ yhdX yheG yheE
yheB yheA yhzD yhaI
yhaH yhzF ecsC yhgB
yhgE yhfC yhfF yhfH
yhfI yhfK yhzC yhjA
yhjC yhjD yhjE yhjN
yisL yizA yisQ yisU
yisX yitH yitK yitL
yitM yitO yitP yitR
yizC yitV yjzC yjzD
yjaU yjbK yjbL yjzK
yjcF yjcH yjcL yjcM
yjcN yjzF yjzG yjcO
yjcP yjcQ yjcR yjcS
yjdB yjdF yjdG yjzH
yjdJ yjfB yjfC yjgA
yjhA yjiA yjzI yjlB
yjlC yjoA yjpA yjqA
rlmG ykaA ykcB ykkA
ykzN ykoI ykoJ ykzB
ykoL ykzP ykrP ykvA
eag ykzQ ykzR ykvR
ykvS ykzS ykwD ykzT
ykzU ykuH ykuI ykuJ
ykuK ykuL ykuO ykoA
ykzV ykyA slp yktA
yktB suhB ykzC ylaA
ylaB ylaE ylaF ylaH
ylaI ylaL ylaN ylbA
ylbG ylzH ylbN ylbP
mraZ ylmG ylmH ybzG
yloC yloU ylqC ylqD
ylqG ylxF rulR ymfF
cinA ybaJ ymzD ymcC
ymaE ymzC ymzA ymaB
ynxB ynzF ynzG ynaB
ynaC ynaE ynaF ynaG
ynzI ynzJ yncM ynzK
flvS yndG yndH yndJ
yndK ynzC yneJ yneK
yneQ yneR yneT ynfCn
yngA yoeC yoeD yogA
yoaK yozS yoaO yoaP
yoaS yoaT yoaZ yobA
yozU yobB yozV yozH
yozI yobF yozW yozX
yozJ yozY yozZ yozM
yobI yoyA yobM yobO
yobR yobT yobU yobV
yocA yozB yocC yozC
yojO yojF yoyC yojE
yoyD pgpB ybbJ ybbK
yomL youB yokH ybcC
ypmT ypmS ypmR ybcH
ypmP ypkP ypjQ ypjP
ybcI rsmJ ypgR ypzF
ypbS ypsA yppF yppE
ypoC ypmA ypjC ypjA
ypiF ypiB ypiA skfG
skfH ybdG yphF yphE
ypzI ypbF ypbD gmmB
ybzI ypzE ypuF ybdN
ybdO ypzJ ypuB yqzK
yqkK yqkE yqkD yqkC
yqkB yqkA yqjZ yqzH
yqjU yqjU yqjT yqjP
yqjF yqjA yqzF yqiH
yqiG ybfA yqhL ybfB
ybfEc yqgY yqgX yqgW
yqgV yqgU ybfF yqgM
yqgL yqzD yqzC ybfH
yqgC yqgB yqgA yqfW
yqfO antE yqxD yqzL
yqeY yqzM yqeM yqeK
yqeF yqeD yqeB ybfN
yrkS psiE yrkO yrkN
yrkK yrkI yrkH yrkF
yrkE yrkD yrzM yrkB
yrzO yrdR yrdK yrdC
yrdB yrdA yrpD yraL
yraK yraJ yraI yraH
yrzP yrhP yrhO yrzI
yrhF yrhE yrhD yrhC
yrzB yrzL yrzQ yrzR
yrrB yrvD yrvC yrbF
yrzS yrzF S1052 yrzH
yrzH yrzT yrbC yszA
ysxD ycbO ysnB ysmA
yslB yshE yshB ysfE
yczK ysdA yscB ytxB
ebfC ytzA ytzJ ytpI
ytzD ytzD ytcJ yczC
msrC ytzK yccF acuB
ytoQ ytzB ytmP ytlR
ytlQ ytfP rmgU rmgS
ytbQ ytaP ytwF yttA
ytqA ycdB ytmB ytmA
ytzI ycdC ytkA yaaL
yuaE yuaD yubF yuzH
yugP yuzI yugN yugM
yugI yugE yuxK yufK
yueI yueH yueE yukE
yukJ mbtH hisP yuiD
yuiB yuiA yuzG yuzB
yuzD yutI yutE yutD
yunD yunF yunG yuzJ
ycgA ycgB yurQ yuzK
yusD yusF yusG yusU
yuxN yvzF yvrP yvsG
yvaD yvbG yvbH yvbI
yvbJ yvbK yvbX yvfG
yveG yveF mdxJ yvdC
yvcT yvzJ yvcN yvcD
yvzA yvcB yvpB yvoD
yvnA yvkN yvjA yviE
yvyE yczL ywsA ywrF
hpxW ywqO ywqN ywqG
ywzD ywqB ywpG ywpF
ywpE ywoF ywoB ywnF
ywnC ywnB ywnA ywzE
ywzF ywmD ywmC ywzB
mntP ywlA ywkD ywkB
ywjG ywjB ywiC ywiB
ywhL ywhK ywhH ywhD
srfT ywhC ywgB ycxB
ywgA ywfO ywzC ywfM
ycxC ywdI ywdF ywdE
ywdD ywdA yczE ywcI
cidA cidB ywbF ywbE
ywzH yxkI yxkH yxkF
gdnE yxkC yxkA yxjN
yclG yxiP yxiO yxzI
yxzJ yxiK yxiJ yxiI
yxzG yxiH yxiG yxzC
yxiF yxxF yxiE yxxE
yxiC yxiB yxzL yxxB
yxeJ yxeG yxeF yxeC
yxeA yxcE yxcD yxcA
yxbD yxbC yxbB yxnB
yxaJ yxaI yxzK yxaC
yyzN yydD yydC yydB
yyzF yycS yyzG yyzO
yycE yycC yycA yybS
yyzH yyzI yyzJ yyzK
yyzL yybN yybM yybH
yybG yybD yybC yybB
yyaT yyaS yyaQ yyaP
yyaO yyaM yyaK yyaJ
ycnE engD yyzM yyaB
cutI ycnL darA yczH
yczO pxpI yaaR yczI
yczJ ydaC ydzA ydzK
ydbA ydbB ydbC trmNF
ydbI ydbL yazA ydcF
ydcG ydcK ydzL ydcO
ydcS ydcT yddA yddF
dayD yddI yddJ yddK
yddM yddQ ydzM yddT
ydzN ydzE ydeD ydeH
ydeI ydeJ ydeK ydeM
ydeN ydeO ydzO ydfB
ydfC ydfE ydfG ydzP
ydzQ ydfK ydzH ydzR
ydgD ydhH ydhI ydhJ
ydiK ydiL ydiM ydzU
ydjB ydjC ydjG ydjH
ydjI ydjJ ydjN ydzJ
ydzX yeaC yeaD yebA
yebD yebE yebG yabN
yezF yerH yerI yeeB
yeeC yeeD yezA yeeG
yeeI yesE yesF yesL
yesU yetH yezD yetK
yetN yfmQ yfmN yfmG
yfmB yflP yflI yflD
yflB yfkK yfjT yfzA
yfjM yfjF yfjE yfjD
yfjC yfjB yfjA yfiH
yfiI
SW 6.8 Short peptides
phrA phrK phrE comS
phrF phrC phrG fbpB
phrI phrH
SW 6.9 NcRNA
rgpA S717_BsrG bsrB_6S_ssrSA spbT
S810_asrG rnpB_RNaseP-bact-b_rnpB ratA_ratA S977
S1022_ncr1175_surF scr_Bacteria-large-SRP_scr bsrA_6S_ssrSB yuzK
ssrA_tmRNA_ssrA
SW 6.9.1 6S RNA
bsrB_6S_ssrSA bsrA_6S_ssrSB
SW 6.9.2 tmRNA
ssrA_tmRNA_ssrA
SW 6.9.3 Small cytoplasmatic RNA
scr_Bacteria-large-SRP_scr
SW 6.9.4 RNA component of RNase P
rnpB_RNaseP-bact-b_rnpB
SW 6.9.5 Regulatory RNAs
rgpA S810_asrG S1022_ncr1175_surF
SW 6.9.6 Antisense RNAs of toxin/antitoxin systems
S717_BsrG spbT ratA_ratA S977
SW 6.9.7 Small RNAs with unknown functions
S977 yuzK